Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 7.7e-71 270.4 138 100.0
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.6e-68 261.2 138 97.8
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.2e-55 219.9 123 91.1
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.3e-54 216.5 132 87.1
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.3e-54 216.5 120 90.0
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 2.2e-54 215.7 122 90.2
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.2e-53 211.5 122 84.4
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 4.2e-53 211.5 122 86.1
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 4.2e-53 211.5 122 86.1
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 4.2e-53 211.5 122 86.1
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 5.5e-53 211.1 122 85.2
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 5.5e-53 211.1 122 85.2
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 9.4e-53 210.3 122 86.1
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 9.4e-53 210.3 122 84.4
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 9.4e-53 210.3 122 85.2
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.2e-52 209.9 122 86.9
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.6e-52 209.5 122 84.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.7e-52 208.8 122 84.4
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.7e-52 208.8 122 86.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.6e-52 208.4 122 84.4
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.0e-51 206.8 122 86.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.0e-51 206.8 120 85.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.0e-51 206.8 122 85.2
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.0e-51 206.8 122 82.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.4e-51 206.5 123 84.6
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.8e-51 206.1 120 85.8
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.8e-51 206.1 122 83.6
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.3e-51 205.7 122 82.8
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.3e-51 205.7 122 86.1
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.3e-51 205.7 122 85.2
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.9e-51 204.9 120 84.2
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 3.9e-51 204.9 122 83.6
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 3.9e-51 204.9 122 85.2
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 3.9e-51 204.9 122 81.1
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.2e-51 204.5 122 86.1
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 6.7e-51 204.1 122 83.6
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 6.7e-51 204.1 119 86.6
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 6.7e-51 204.1 122 86.1
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-50 203.4 122 83.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.1e-50 203.4 122 84.4
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.1e-50 203.4 122 84.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.1e-50 203.4 122 83.6
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.1e-50 203.4 122 82.8
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.5e-50 203.0 122 84.4
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.5e-50 203.0 122 83.6
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.0e-50 202.6 122 82.8
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.6e-50 202.2 122 82.0
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.3e-50 201.8 119 83.2
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 5.7e-50 201.1 122 83.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 5.7e-50 201.1 124 83.9
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 7.4e-50 200.7 123 82.9
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 7.4e-50 200.7 122 83.6
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 7.4e-50 200.7 122 80.3
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.7e-49 199.5 122 82.0
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.7e-49 199.5 122 82.0
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 2.2e-49 199.1 122 82.8
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.8e-49 198.7 122 82.8
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.8e-49 198.7 123 81.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 3.7e-49 198.4 122 80.3
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 4.8e-49 198.0 122 79.5
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-48 196.8 120 83.3
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.1e-48 196.8 122 80.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-48 196.4 122 80.3
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.8e-48 196.1 122 79.5
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.8e-48 196.1 123 80.5
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.4e-48 195.7 122 82.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.1e-48 195.3 120 81.7
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 4.1e-48 194.9 122 77.9
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 7.0e-48 194.1 122 79.5
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.6e-47 193.0 122 79.5
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 2.0e-47 192.6 123 78.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.6e-47 192.2 118 79.7
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 2.6e-47 192.2 123 81.3
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.6e-47 192.2 122 79.5
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.6e-47 192.2 122 79.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 2.6e-47 192.2 123 78.0
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 5.9e-47 191.0 122 78.7
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 5.9e-47 191.0 122 78.7
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.2e-46 189.1 112 83.9
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.9e-46 188.7 122 76.2
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.9e-46 188.7 124 75.8
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 8.5e-46 187.2 122 75.4
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.1e-45 186.8 122 74.6
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.5e-45 186.4 129 73.6
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.5e-45 186.4 122 77.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.9e-45 186.0 122 75.4
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.9e-45 186.0 122 75.4
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.9e-45 186.0 122 75.4
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.9e-45 186.0 122 75.4
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.2e-45 185.3 122 76.2
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 4.2e-45 184.9 145 70.3
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.6e-44 183.0 122 73.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.6e-44 181.8 122 73.0
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 6.1e-44 181.0 119 74.8
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 6.1e-44 181.0 119 74.8
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.4e-43 179.9 120 75.8
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 3.0e-43 178.7 122 73.0
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 4.0e-43 178.3 120 75.0
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.8e-43 177.6 152 61.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.4e-42 174.9 100 90.0
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 7.5e-42 174.1 122 73.0
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 7.5e-42 174.1 126 70.6
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 7.5e-42 174.1 150 62.7
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.2e-41 172.6 116 75.0
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.8e-40 169.5 122 74.6
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.0e-38 161.4 129 61.2
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.1e-37 160.2 121 66.9
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.5e-37 157.9 120 68.3
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 6.8e-35 151.0 119 66.4
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.7e-33 146.4 120 66.7
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.0e-31 139.4 72 97.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 4.5e-31 138.3 82 81.7
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 1.2e-28 130.2 124 54.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 3.4e-26 122.1 122 58.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 3.4e-26 122.1 108 55.6
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.7e-25 119.8 111 53.2
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 3.7e-25 118.6 72 80.6
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 4.9e-25 118.2 122 56.6
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 4.9e-25 118.2 71 80.3
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 4.1e-24 115.2 80 77.5
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 4.6e-23 111.7 72 77.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.3e-21 105.1 71 71.8
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 5.6e-21 104.8 68 75.0
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.1e-20 102.8 77 63.6
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 9.5e-13 77.4 53 77.4
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.7e-12 75.1 40 90.0
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 4.0e-11 72.0 72 48.6
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.4e-10 68.9 40 87.5
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 7.1e-08 61.2 67 40.3


User provided reference genes

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