Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.3e-73 279.6 146 100.0
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 9.6e-56 220.3 172 70.3
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 1.6e-55 219.5 170 71.8
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 1.6e-55 219.5 172 69.2
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 3.7e-55 218.4 172 70.3
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 4.8e-55 218.0 169 69.2
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 1.4e-54 216.5 173 68.8
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.0e-53 212.6 172 70.9
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 9.9e-53 210.3 173 68.2
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 1.3e-52 209.9 173 66.5
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 1.7e-52 209.5 173 66.5
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 1.7e-52 209.5 173 68.8
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 2.9e-52 208.8 172 65.7
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 2.9e-52 208.8 171 66.1
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 6.4e-52 207.6 173 67.6
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 8.4e-52 207.2 147 73.5
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 1.1e-51 206.8 172 67.4
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.9e-51 206.1 173 67.6
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 2.4e-51 205.7 173 66.5
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 3.2e-51 205.3 172 65.1
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 3.2e-51 205.3 172 68.0
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 5.5e-51 204.5 173 65.9
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 1.6e-50 203.0 172 66.9
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 2.1e-50 202.6 172 64.5
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 2.1e-50 202.6 172 66.3
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 2.7e-50 202.2 172 65.7
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 6.0e-50 201.1 169 65.1
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 7.9e-50 200.7 174 64.9
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 1.0e-49 200.3 173 64.7
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.3e-49 199.9 170 66.5
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 1.8e-49 199.5 172 64.0
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 3.0e-49 198.7 172 62.8
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 3.0e-49 198.7 173 63.0
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 3.0e-49 198.7 172 64.5
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 3.9e-49 198.4 173 65.3
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 5.1e-49 198.0 172 63.4
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 5.1e-49 198.0 172 64.5
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 5.1e-49 198.0 173 63.6
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 5.1e-49 198.0 174 62.1
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 8.7e-49 197.2 173 62.4
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 1.5e-48 196.4 173 65.9
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 1.5e-48 196.4 169 62.7
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.9e-48 196.1 173 65.3
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 1.9e-48 196.1 173 64.2
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 2.5e-48 195.7 172 64.5
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 2.5e-48 195.7 173 62.4
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 4.3e-48 194.9 169 62.7
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 5.6e-48 194.5 174 60.3
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 5.6e-48 194.5 173 63.0
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 7.4e-48 194.1 172 64.0
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 7.4e-48 194.1 172 63.4
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 7.4e-48 194.1 173 63.0
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 7.4e-48 194.1 173 64.7
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 7.4e-48 194.1 173 64.2
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 7.4e-48 194.1 172 63.4
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 7.4e-48 194.1 169 61.5
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.3e-47 193.4 172 64.0
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 1.3e-47 193.4 172 62.8
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 1.3e-47 193.4 169 61.5
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.3e-47 193.4 173 64.2
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 1.6e-47 193.0 169 60.9
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 2.1e-47 192.6 118 84.7
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 2.1e-47 192.6 173 64.2
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.8e-47 192.2 173 61.3
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.8e-47 192.2 173 61.3
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 3.7e-47 191.8 171 63.2
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.7e-47 191.8 173 63.6
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 4.8e-47 191.4 172 62.2
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 6.2e-47 191.0 169 60.9
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 8.2e-47 190.7 169 60.4
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 8.2e-47 190.7 173 61.8
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.1e-46 190.3 174 63.2
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.1e-46 190.3 173 63.6
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.4e-46 189.9 159 69.8
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 1.4e-46 189.9 173 63.6
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.4e-46 189.9 173 63.6
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.4e-46 189.9 173 63.0
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 1.8e-46 189.5 173 62.4
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 4.0e-46 188.3 173 61.8
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.0e-46 188.3 171 64.3
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 4.0e-46 188.3 173 61.3
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 4.0e-46 188.3 170 62.4
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 4.0e-46 188.3 170 62.4
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 5.3e-46 188.0 173 61.8
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 9.0e-46 187.2 169 60.4
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 1.2e-45 186.8 168 60.1
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 1.5e-45 186.4 173 60.1
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 1.5e-45 186.4 168 59.5
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 2.0e-45 186.0 172 60.5
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 4.5e-45 184.9 262 45.8
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 5.8e-45 184.5 173 60.7
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 7.6e-45 184.1 118 79.7
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 2.9e-44 182.2 173 61.8
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 2.9e-44 182.2 169 60.4
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 6.5e-44 181.0 173 60.1
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 1.1e-43 180.3 169 56.8
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 2.5e-43 179.1 166 59.0
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 2.1e-42 176.0 173 59.0
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 7.9e-42 174.1 167 57.5
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 1.3e-41 173.3 169 57.4
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 3.0e-41 172.2 119 75.6
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.9e-41 171.8 170 60.6
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 8.7e-41 170.6 167 57.5
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 5.7e-40 167.9 166 56.0
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 1.3e-39 166.8 167 55.1
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.3e-39 166.8 173 56.6
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 1.3e-39 166.8 169 55.6
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.6e-39 166.4 118 72.9
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 2.2e-39 166.0 166 56.0
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 2.2e-39 166.0 166 56.0
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 2.2e-39 166.0 166 56.0
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 2.8e-39 165.6 166 56.0
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 2.8e-39 165.6 166 56.0
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 2.8e-39 165.6 122 68.9
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 6.3e-39 164.5 166 55.4
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 1.8e-38 162.9 167 53.9
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.5e-37 159.8 199 52.8
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 2.0e-37 159.5 166 56.0
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 5.9e-37 157.9 118 66.9
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 3.8e-36 155.2 170 48.2
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 3.6e-34 148.7 170 47.1
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 2.5e-32 142.5 173 47.4
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 3.7e-31 138.7 146 59.6
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 2.6e-29 132.5 182 44.5
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 4.2e-27 125.2 178 38.2
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 5.5e-27 124.8 127 58.3
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 3.6e-26 122.1 125 56.0
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 3.6e-26 122.1 127 55.9
CSS0026699 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.9e-25 118.6 139 54.7
BcaC09g49432 Brassica carinata HOM05D004387 ORTHO05D005218 9.7e-24 114.0 102 61.8
C01p36790 Brassica napus HOM05D004387 ORTHO05D005218 1.3e-23 113.6 101 62.4
BolC1t03637H Brassica oleracea HOM05D004387 ORTHO05D005218 1.3e-23 113.6 101 62.4
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 4.8e-23 111.7 166 38.6
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.1e-22 110.5 147 53.1
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.4e-22 110.2 162 48.8
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 3.4e-21 105.5 79 70.9
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 5.9e-21 104.8 133 41.4
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 1.6e-18 96.7 163 41.1
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.8e-17 93.2 147 43.5
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 5.7e-16 88.2 114 45.6
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.8e-15 85.9 48 89.6
SEGI_27972 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 9.1e-14 80.9 147 37.4
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 3.5e-13 79.0 44 88.6
Gohir.D01G091400 Gossypium hirsutum HOM05D004387 ORTHO05D005218 3.5e-13 79.0 44 88.6
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 7.7e-13 77.8 153 41.8
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 1.3e-12 77.0 48 75.0
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 8.5e-12 74.3 135 35.6
MCO07G362 Micromonas commoda HOM05D004387 ORTHO05D005218 1.9e-11 73.2 123 30.1
CAN.G34.11 Capsicum annuum HOM05D004387 ORTHO05D005218 8.0e-10 67.8 52 65.4
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.0e-09 65.9 118 44.1
SEGI_11138 Sequoiadendron giganteum HOM05D004387 ORTHO05D050937 1.2e-08 63.9 44 68.2
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 1.5e-08 63.5 34 88.2
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 4.4e-08 62.0 43 65.1


User provided reference genes

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