Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 7.3e-70 267.7 203 100.0
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.5e-51 206.8 157 84.7
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.4e-51 205.3 131 84.0
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 7.6e-51 204.5 181 81.8
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 7.6e-51 204.5 187 81.3
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 7.6e-51 204.5 184 79.9
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.3e-50 203.8 182 75.8
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.7e-50 203.4 182 78.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.9e-50 202.6 188 70.7
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.9e-50 202.6 182 72.5
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.8e-50 202.2 179 74.3
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 6.4e-50 201.4 151 85.4
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 8.4e-50 201.1 178 74.7
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.1e-49 200.7 182 73.1
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.9e-49 199.9 178 79.2
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.9e-49 199.9 182 80.2
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.9e-49 199.9 182 74.2
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.4e-49 199.5 176 82.4
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.4e-49 199.5 176 82.4
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 4.2e-49 198.7 101 92.1
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 9.3e-49 197.6 148 80.4
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 9.3e-49 197.6 148 80.4
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 9.3e-49 197.6 130 83.8
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-48 197.2 132 84.8
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.6e-48 196.8 179 76.0
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.6e-48 196.8 207 80.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.1e-48 196.4 151 76.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 4.6e-48 195.3 173 81.5
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 7.9e-48 194.5 182 71.4
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 7.9e-48 194.5 189 74.1
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.0e-47 194.1 150 76.0
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.0e-47 194.1 188 72.9
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.0e-47 194.1 180 62.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.0e-47 194.1 182 70.9
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.3e-47 193.7 183 75.4
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 1.3e-47 193.7 179 72.1
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.3e-47 193.7 151 79.5
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.7e-47 193.4 150 74.0
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.7e-47 193.4 153 77.1
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.3e-47 193.0 185 73.0
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 2.3e-47 193.0 187 67.9
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.3e-47 193.0 183 76.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.3e-47 193.0 150 83.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.0e-47 192.6 178 77.5
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.9e-47 192.2 179 76.5
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 3.9e-47 192.2 150 81.3
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 5.1e-47 191.8 154 79.9
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 6.6e-47 191.4 150 75.3
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 6.6e-47 191.4 179 73.2
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 8.7e-47 191.0 179 75.4
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 8.7e-47 191.0 183 66.7
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-46 190.7 182 70.9
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.5e-46 190.3 173 67.1
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.5e-46 190.3 173 67.1
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.9e-46 189.9 151 80.1
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.9e-46 189.9 150 79.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.9e-46 189.9 152 82.9
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 2.5e-46 189.5 180 80.0
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.5e-46 189.5 184 67.9
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.5e-46 189.5 183 76.0
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 2.5e-46 189.5 149 80.5
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 3.3e-46 189.1 184 76.1
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.3e-46 189.1 182 76.4
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.3e-46 189.1 182 76.4
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 3.3e-46 189.1 173 66.5
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.3e-46 188.7 151 71.5
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.3e-46 188.7 156 80.1
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 5.6e-46 188.3 157 77.7
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 9.6e-46 187.6 183 73.2
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 9.6e-46 187.6 182 74.2
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.3e-45 187.2 100 88.0
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-45 187.2 150 80.0
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-45 187.2 150 80.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.6e-45 186.8 152 75.7
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.6e-45 186.8 146 75.3
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.6e-45 186.8 147 81.6
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.8e-45 186.0 137 69.3
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.8e-45 186.0 183 76.5
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 2.8e-45 186.0 146 79.5
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.8e-45 186.0 158 76.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.8e-45 186.0 100 85.0
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.6e-45 185.7 100 85.0
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.6e-45 185.7 182 76.9
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 4.8e-45 185.3 120 82.5
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 6.2e-45 184.9 95 90.5
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.2e-45 184.9 150 79.3
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.2e-45 184.9 152 76.3
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 6.2e-45 184.9 147 80.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.1e-44 184.1 99 86.9
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.1e-44 184.1 150 78.0
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.1e-44 184.1 153 75.8
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.1e-44 184.1 183 68.3
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-44 183.7 153 73.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-44 183.7 153 73.2
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.4e-44 183.7 182 76.4
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.4e-44 183.7 96 89.6
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.8e-44 183.3 148 82.4
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.4e-44 183.0 145 82.1
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.4e-44 183.0 146 76.0
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.4e-44 183.0 148 75.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 3.1e-44 182.6 153 72.5
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 3.1e-44 182.6 173 69.4
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.1e-44 182.6 150 82.0
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.0e-44 182.2 126 79.4
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 4.0e-44 182.2 148 83.8
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 4.0e-44 182.2 152 74.3
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 4.0e-44 182.2 154 74.0
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 4.0e-44 182.2 184 73.4
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.3e-44 181.8 184 66.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 6.9e-44 181.4 183 72.1
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 9.0e-44 181.0 186 66.7
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 9.0e-44 181.0 147 83.7
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 9.0e-44 181.0 157 82.2
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-43 180.6 130 68.5
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.2e-43 180.6 148 70.3
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.5e-43 180.3 128 69.5
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-43 180.3 184 64.7
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-43 180.3 151 71.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-43 180.3 184 64.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.0e-43 179.9 153 73.9
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 2.6e-43 179.5 148 74.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 3.4e-43 179.1 96 84.4
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 4.5e-43 178.7 154 72.1
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 5.8e-43 178.3 173 66.5
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 9.9e-43 177.6 191 61.3
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 9.9e-43 177.6 191 64.4
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-42 177.2 153 73.2
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.3e-42 177.2 153 73.2
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-42 177.2 153 73.2
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.7e-42 176.8 153 73.9
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 2.9e-42 176.0 184 63.6
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.8e-42 175.6 151 68.9
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 4.9e-42 175.3 181 63.5
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 4.9e-42 175.3 88 92.0
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 8.4e-42 174.5 153 70.6
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.4e-41 172.9 148 73.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.2e-41 172.2 155 66.5
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 4.2e-41 172.2 119 84.9
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.2e-41 172.2 89 88.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 7.1e-41 171.4 149 73.2
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 7.1e-41 171.4 93 87.1
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 9.3e-41 171.0 146 78.1
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 9.3e-41 171.0 146 78.1
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.2e-40 170.6 150 71.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 4.6e-40 168.7 156 73.1
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 6.0e-40 168.3 155 69.0
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 6.7e-39 164.9 148 74.3
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.1e-36 157.5 178 61.2
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.1e-33 147.5 76 86.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.7e-32 142.9 136 63.2
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-30 137.5 80 77.5
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 3.3e-30 136.0 174 64.9
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 4.3e-30 135.6 122 61.5
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 3.8e-26 122.5 75 68.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 8.4e-26 121.3 70 84.3
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 3.5e-24 115.9 56 94.6
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.1e-24 115.2 90 85.6
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.3e-21 107.5 101 50.5
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.4e-20 103.2 88 60.2
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.5e-19 100.5 49 89.8
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.7e-18 97.1 136 48.5
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.9e-15 85.9 56 71.4
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 5.1e-15 85.5 56 69.6
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.0e-11 73.6 43 79.1
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-09 67.4 41 78.0
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-09 67.4 41 78.0
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 4.2e-09 65.9 41 75.6
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 5.5e-09 65.5 36 80.6
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-08 64.3 41 75.6
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-08 64.3 41 75.6
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-08 64.3 41 75.6
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 4.7e-08 62.4 40 72.5


User provided reference genes

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