Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 9.6e-141 503.4 246 100.0
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 9.7e-109 397.1 267 77.5
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 7.2e-104 380.9 274 74.8
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.9e-102 375.2 271 74.9
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 1.1e-88 330.5 281 65.8
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 8.0e-87 324.3 281 64.8
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 4.8e-84 315.1 282 62.8
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 1.2e-82 310.5 273 63.7
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 3.5e-82 308.9 274 60.6
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 3.5e-82 308.9 274 61.3
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 3.5e-82 308.9 275 60.7
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 4.5e-82 308.5 317 56.8
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 1.0e-81 307.4 259 63.3
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 1.3e-81 307.0 282 60.3
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.3e-81 307.0 274 62.0
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 2.2e-81 306.2 268 61.6
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.2e-81 306.2 305 57.7
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 3.8e-81 305.4 274 61.3
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 3.8e-81 305.4 281 61.6
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 5.0e-81 305.1 283 59.7
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 5.0e-81 305.1 274 61.7
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 5.0e-81 305.1 274 60.6
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 5.0e-81 305.1 283 60.4
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 6.5e-81 304.7 282 60.6
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 8.5e-81 304.3 279 59.9
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 2.5e-80 302.8 281 59.4
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 2.5e-80 302.8 273 60.8
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 3.2e-80 302.4 259 62.5
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 4.2e-80 302.0 271 60.1
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.2e-80 302.0 275 62.5
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 5.5e-80 301.6 276 59.4
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 5.5e-80 301.6 283 60.1
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 7.2e-80 301.2 281 60.1
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 9.4e-80 300.8 274 60.2
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 9.4e-80 300.8 271 59.0
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.6e-79 300.1 283 56.9
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 2.1e-79 299.7 273 60.1
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 2.1e-79 299.7 273 60.1
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 2.1e-79 299.7 274 60.2
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 2.7e-79 299.3 280 57.9
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 2.7e-79 299.3 220 68.2
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 3.6e-79 298.9 274 59.9
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 4.7e-79 298.5 282 59.6
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 6.1e-79 298.1 280 58.9
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 6.1e-79 298.1 277 59.2
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 8.0e-79 297.7 282 59.2
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 8.0e-79 297.7 261 61.7
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 8.0e-79 297.7 277 59.2
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 1.0e-78 297.4 249 63.5
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.0e-78 297.4 280 58.9
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.4e-78 297.0 288 58.7
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.4e-78 297.0 272 59.6
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.8e-78 296.6 277 60.3
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 2.3e-78 296.2 246 63.4
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 2.3e-78 296.2 239 65.3
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 3.0e-78 295.8 246 63.4
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 4.0e-78 295.4 278 60.1
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 4.0e-78 295.4 277 58.8
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 5.2e-78 295.0 284 57.7
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.2e-78 295.0 262 62.2
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 5.2e-78 295.0 281 57.7
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 6.8e-78 294.7 279 59.1
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 6.8e-78 294.7 233 66.1
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 6.8e-78 294.7 266 60.5
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 6.8e-78 294.7 276 58.3
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 8.8e-78 294.3 275 58.2
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 8.8e-78 294.3 284 57.7
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 8.8e-78 294.3 279 58.1
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 1.2e-77 293.9 248 62.5
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.2e-77 293.9 244 61.9
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.2e-77 293.9 262 62.2
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.2e-77 293.9 273 58.2
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.2e-77 293.9 283 56.9
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.5e-77 293.5 248 62.5
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 1.5e-77 293.5 277 58.8
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 1.5e-77 293.5 269 61.7
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 2.0e-77 293.1 270 60.0
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.0e-77 293.1 242 64.5
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 2.0e-77 293.1 252 62.3
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 2.0e-77 293.1 262 61.8
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 2.6e-77 292.7 276 59.8
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 2.6e-77 292.7 262 61.8
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.6e-77 292.7 262 61.8
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 2.6e-77 292.7 220 67.3
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 3.4e-77 292.4 248 62.1
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 4.4e-77 292.0 273 59.7
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.4e-77 292.0 275 57.8
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 4.4e-77 292.0 269 60.6
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 9.8e-77 290.8 271 59.0
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 9.8e-77 290.8 262 61.5
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.3e-76 290.4 231 65.4
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.3e-76 290.4 233 64.4
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.8e-76 289.3 252 61.5
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 2.8e-76 289.3 248 61.7
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 2.8e-76 289.3 248 61.7
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.8e-76 289.3 219 66.7
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 6.3e-76 288.1 247 62.3
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 6.3e-76 288.1 281 55.2
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 6.3e-76 288.1 250 60.4
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 8.3e-76 287.7 273 59.7
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.4e-75 287.0 271 58.3
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 1.4e-75 287.0 280 54.3
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 1.8e-75 286.6 277 58.5
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 2.4e-75 286.2 215 65.6
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 3.1e-75 285.8 317 52.7
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 3.1e-75 285.8 271 59.8
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 4.1e-75 285.4 248 61.7
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 4.5e-74 282.0 271 56.5
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 5.9e-74 281.6 242 61.6
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 7.7e-74 281.2 281 58.7
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 2.9e-73 279.3 314 52.9
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 3.8e-73 278.9 321 52.3
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 1.1e-72 277.3 269 56.1
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 1.9e-72 276.6 264 61.0
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.9e-72 276.6 249 59.8
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.2e-71 273.9 273 58.2
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.2e-69 267.3 192 72.4
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 2.6e-69 266.2 214 61.7
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 2.6e-69 266.2 274 54.7
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.6e-69 266.2 192 71.9
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.4e-69 265.4 280 55.0
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 2.2e-68 263.1 280 52.5
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.4e-67 259.6 278 52.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 9.2e-67 257.7 192 69.3
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.0e-66 256.5 225 61.3
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.7e-66 256.1 237 58.2
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.7e-66 256.1 189 70.9
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 3.5e-66 255.8 239 57.3
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 4.5e-66 255.4 189 70.4
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 4.5e-66 255.4 225 60.9
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 7.7e-66 254.6 254 56.7
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 4.7e-63 245.4 215 58.1
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 8.9e-62 241.1 283 50.9
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 2.2e-60 236.5 222 55.9
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 2.2e-60 236.5 222 55.9
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 8.3e-60 234.6 291 49.1
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.8e-59 233.4 211 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 2.4e-59 233.0 191 62.8
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.4e-54 217.2 210 54.3
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 2.4e-51 206.5 195 58.5
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.9e-49 199.1 226 52.2
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 8.1e-47 191.4 221 48.4
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.8e-46 190.3 257 47.1
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.3e-46 189.9 254 47.2
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.1e-46 189.5 109 87.2
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 5.2e-46 188.7 211 48.8
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 8.9e-46 188.0 219 49.8
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 8.3e-44 181.4 112 80.4
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.4e-43 180.6 115 77.4
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.9e-43 180.3 112 80.4
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 3.5e-42 176.0 136 68.4
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 5.1e-41 172.2 176 56.2
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 5.1e-41 172.2 108 79.6
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 2.6e-37 159.8 156 54.5
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.4e-30 137.5 81 84.0
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 7.1e-27 125.2 243 39.5
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 9.3e-27 124.8 145 52.4
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 1.0e-25 121.3 161 44.1
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.9e-19 100.5 50 92.0
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.0e-17 94.7 114 47.4
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 2.3e-17 93.6 53 81.1
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 5.1e-17 92.4 111 47.7
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.1e-17 92.4 107 50.5
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 7.4e-16 88.6 153 37.9
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 3.1e-14 83.2 80 56.2
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 4.5e-13 79.3 48 81.2
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 5.8e-13 79.0 46 78.3
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 6.7e-09 65.5 38 73.7
Medtr5g022680 Medicago truncatula HOM05D003708 ORTHO05D004452 1.3e-07 61.2 49 57.1
BcaB01g05444 Brassica carinata HOM05D003708 ORTHO05D004452 5.3e-06 55.8 86 39.5


User provided reference genes

Program Settings