Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.0e-222 776.9 548 100.0
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.0e-206 723.8 614 79.5
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.3e-150 536.6 548 70.1
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 5.8e-130 468.8 549 63.8
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 7.6e-130 468.4 548 63.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 9.3e-128 461.5 531 61.6
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 4.6e-127 459.1 546 70.1
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.1e-124 450.3 547 63.3
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 3.2e-120 436.4 545 53.6
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 7.1e-120 435.3 537 57.0
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 3.5e-119 433.0 548 64.2
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 2.8e-116 423.3 547 63.4
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.8e-116 423.3 545 66.6
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 1.4e-115 421.0 546 68.9
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 6.9e-115 418.7 546 67.0
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 6.9e-115 418.7 549 61.6
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 9.0e-115 418.3 538 53.5
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.1e-112 411.4 477 61.6
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 9.3e-112 408.3 519 56.8
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.2e-111 407.9 546 60.4
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 2.1e-111 407.1 543 58.2
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 6.7e-110 402.1 515 63.3
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.9e-109 400.6 490 57.8
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.9e-109 400.6 546 61.4
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.3e-109 399.8 543 56.9
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 2.2e-108 397.1 543 56.5
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.2e-106 391.3 542 57.2
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 3.4e-106 389.8 525 61.7
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.5e-106 389.4 542 47.6
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 7.7e-106 388.7 571 51.5
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 5.0e-105 386.0 550 56.0
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 5.0e-105 386.0 541 59.3
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 7.2e-104 382.1 547 54.5
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.6e-103 379.8 481 58.4
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.0e-102 378.3 468 72.6
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 1.0e-102 378.3 570 53.5
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 5.1e-102 375.9 470 62.1
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 6.7e-102 375.6 468 72.4
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 2.5e-101 373.6 545 61.1
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 6.3e-100 369.0 489 66.5
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 4.1e-99 366.3 545 60.2
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 6.9e-99 365.5 548 50.5
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.2e-98 364.8 455 67.3
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 3.4e-98 363.2 544 57.7
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 5.0e-97 359.4 590 53.7
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 5.0e-97 359.4 547 63.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 5.5e-96 355.9 513 52.2
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 1.6e-95 354.4 547 63.6
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.6e-95 354.4 518 65.6
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.7e-95 353.6 547 61.8
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 4.7e-95 352.8 548 63.5
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 7.9e-95 352.1 486 58.2
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 5.1e-94 349.4 547 57.2
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 2.6e-93 347.1 547 55.9
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 7.4e-93 345.5 470 61.5
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.3e-92 344.7 491 60.9
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 2.2e-92 344.0 548 51.8
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 2.8e-92 343.6 467 63.6
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 3.7e-92 343.2 485 61.0
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 7.0e-91 339.0 490 61.4
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.6e-90 337.0 547 61.8
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 3.5e-90 336.7 547 55.0
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 5.5e-88 329.3 458 51.7
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 7.2e-88 328.9 546 55.7
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 9.4e-88 328.6 464 51.1
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 1.6e-87 327.8 547 53.6
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.1e-87 327.4 470 52.6
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.0e-86 325.1 477 58.7
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 6.7e-86 322.4 425 64.0
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.5e-85 321.2 534 54.9
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 1.5e-85 321.2 549 55.9
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.5e-85 321.2 541 59.7
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 9.7e-85 318.5 536 45.0
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 1.3e-84 318.2 542 61.3
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 8.2e-84 315.5 543 53.6
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.1e-83 315.1 473 49.0
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 3.1e-83 313.5 552 53.4
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 2.0e-82 310.8 455 56.0
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 4.5e-82 309.7 486 51.0
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.5e-80 303.9 534 53.9
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 2.5e-80 303.9 535 54.0
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 2.5e-80 303.9 478 55.9
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.2e-79 301.6 468 57.7
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 2.7e-79 300.4 481 59.7
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 5.2e-78 296.2 528 54.7
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 2.0e-77 294.3 535 53.1
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.3e-76 291.6 520 42.7
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 6.3e-76 289.3 529 52.9
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.4e-75 287.3 433 62.6
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 7.7e-74 282.3 534 52.2
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 2.9e-73 280.4 528 53.2
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.2e-71 275.0 344 57.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.6e-71 274.6 528 52.7
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 2.1e-71 274.2 464 56.9
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 2.7e-71 273.9 464 56.9
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.2e-70 269.6 287 68.6
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 6.3e-68 262.7 527 52.0
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 9.2e-67 258.8 446 48.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.6e-65 252.7 551 37.9
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 8.6e-65 252.3 542 47.8
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.3e-64 250.0 434 40.3
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 8.0e-63 245.7 327 59.0
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 1.3e-57 228.4 299 56.9
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.0e-53 214.5 206 57.3
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.2e-45 188.7 330 49.7
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.3e-44 185.3 150 63.3
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 2.9e-44 184.1 403 50.4
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 4.1e-43 180.3 211 59.2
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 5.4e-43 179.9 202 65.8
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 3.6e-39 167.2 129 63.6
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.3e-32 144.1 331 29.3
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 5.6e-32 143.3 454 30.6
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.1e-31 141.4 85 87.1
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 4.0e-30 137.1 157 49.0
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.4e-27 126.7 338 26.9
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.0e-25 122.5 95 63.2
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 1.3e-25 122.1 134 49.3
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.0e-25 120.9 312 45.2
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.7e-18 97.8 146 38.4
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.9e-17 94.0 171 34.5
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.6e-15 88.6 60 73.3
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 4.8e-15 87.0 108 45.4
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 9.0e-14 82.8 148 30.4
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.3e-12 79.0 91 47.3
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 3.8e-12 77.4 52 71.2
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 4.9e-12 77.0 46 82.6
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 1.9e-11 75.1 56 67.9
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.2e-11 74.3 101 70.3
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 8.7e-09 66.2 70 44.3
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 6.2e-07 60.1 44 65.9


User provided reference genes

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