Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 5.4e-77 290.8 135 100.0
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.7e-62 242.7 136 83.1
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 7.3e-58 227.3 134 75.4
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 3.6e-57 224.9 134 76.9
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 3.9e-51 204.9 134 67.9
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 8.6e-51 203.8 132 69.7
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.6e-49 199.5 134 67.9
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 2.1e-49 199.1 133 66.9
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 1.4e-48 196.4 127 67.7
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.8e-48 196.1 134 64.9
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 5.2e-48 194.5 131 66.4
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 6.8e-48 194.1 137 67.2
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.2e-47 193.4 134 64.2
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.2e-47 193.4 127 66.9
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 1.2e-47 193.4 131 64.1
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 1.5e-47 193.0 129 65.9
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 2.0e-47 192.6 134 66.4
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 2.6e-47 192.2 132 62.9
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 3.4e-47 191.8 135 63.0
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 7.5e-47 190.7 129 65.1
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 9.8e-47 190.3 127 66.9
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 1.3e-46 189.9 134 62.7
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.7e-46 189.5 135 63.0
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 1.7e-46 189.5 133 62.4
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 1.7e-46 189.5 133 62.4
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.7e-46 189.5 135 65.9
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 2.2e-46 189.1 127 66.1
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 2.2e-46 189.1 131 62.6
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 3.7e-46 188.3 132 63.6
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 3.7e-46 188.3 133 63.9
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 3.7e-46 188.3 134 63.4
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 4.9e-46 188.0 135 64.4
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 6.4e-46 187.6 131 64.9
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 8.3e-46 187.2 134 62.7
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 8.3e-46 187.2 134 62.7
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 1.1e-45 186.8 134 62.7
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 1.1e-45 186.8 128 67.2
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 1.4e-45 186.4 131 62.6
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.9e-45 186.0 127 63.0
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 2.4e-45 185.7 134 62.7
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 3.2e-45 185.3 127 64.6
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 4.1e-45 184.9 134 62.7
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 4.1e-45 184.9 135 60.0
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 4.1e-45 184.9 134 61.9
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 4.1e-45 184.9 134 61.9
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 5.4e-45 184.5 131 62.6
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 5.4e-45 184.5 134 61.9
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 9.2e-45 183.7 131 61.1
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 9.2e-45 183.7 132 63.6
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 9.2e-45 183.7 131 65.6
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 9.2e-45 183.7 134 62.7
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 1.2e-44 183.3 131 60.3
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.6e-44 183.0 134 59.0
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.6e-44 183.0 134 59.0
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 1.6e-44 183.0 135 62.2
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 2.1e-44 182.6 131 64.9
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 2.1e-44 182.6 135 64.4
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 2.7e-44 182.2 134 59.0
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 6.0e-44 181.0 131 63.4
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 7.8e-44 180.6 132 59.8
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.0e-43 180.3 131 60.3
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.0e-43 180.3 135 62.2
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.3e-43 179.9 135 62.2
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 3.0e-43 178.7 127 62.2
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 3.0e-43 178.7 127 63.0
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 3.0e-43 178.7 135 61.5
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 3.9e-43 178.3 134 58.2
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 3.9e-43 178.3 133 60.9
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 5.1e-43 177.9 134 58.2
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 6.6e-43 177.6 132 59.1
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 8.6e-43 177.2 125 65.6
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.1e-42 176.8 135 61.5
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.6e-41 172.9 127 63.0
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 2.1e-41 172.6 132 58.3
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 2.8e-41 172.2 135 57.8
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 2.8e-41 172.2 134 59.7
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 2.8e-41 172.2 135 60.0
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 4.7e-41 171.4 135 59.3
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 6.2e-41 171.0 132 59.8
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.3e-40 169.1 116 64.7
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.3e-40 169.1 116 64.7
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 2.3e-40 169.1 130 59.2
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 4.0e-40 168.3 124 58.9
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 5.2e-40 167.9 132 56.1
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 6.8e-40 167.5 132 55.3
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 6.8e-40 167.5 130 60.8
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 8.9e-40 167.2 128 58.6
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.5e-39 166.4 132 57.6
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 2.0e-39 166.0 132 54.5
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 5.8e-39 164.5 124 58.1
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 5.8e-39 164.5 124 58.1
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 5.8e-39 164.5 138 55.1
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 1.3e-38 163.3 124 57.3
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.3e-38 163.3 133 57.1
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.3e-38 163.3 135 57.8
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 1.7e-38 162.9 124 57.3
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 3.8e-38 161.8 114 64.9
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 3.8e-38 161.8 132 53.8
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.8e-38 161.8 128 57.0
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.8e-38 161.8 128 57.0
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 4.9e-38 161.4 124 57.3
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 4.9e-38 161.4 124 58.1
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 4.9e-38 161.4 136 58.1
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 6.4e-38 161.0 135 57.0
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 6.4e-38 161.0 124 57.3
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 6.4e-38 161.0 136 55.9
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 1.1e-37 160.2 136 58.1
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 4.1e-37 158.3 136 57.4
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 7.1e-37 157.5 136 56.6
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 9.2e-37 157.1 137 57.7
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 9.2e-37 157.1 161 50.3
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 2.1e-36 156.0 135 56.3
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 2.7e-36 155.6 130 56.2
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.5e-36 155.2 138 54.3
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 3.5e-36 155.2 133 54.1
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 3.5e-36 155.2 132 56.8
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 4.6e-36 154.8 127 57.5
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 6.0e-36 154.5 136 55.9
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 6.0e-36 154.5 136 55.9
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 6.0e-36 154.5 126 56.3
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 1.3e-35 153.3 128 55.5
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 3.0e-35 152.1 137 55.5
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 3.0e-35 152.1 128 55.5
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 5.1e-35 151.4 133 54.1
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 1.5e-34 149.8 136 54.4
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.9e-34 149.4 133 54.1
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 7.3e-34 147.5 136 54.4
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 9.6e-34 147.1 133 53.4
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 9.6e-34 147.1 133 53.4
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.6e-33 146.4 161 49.1
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 2.1e-33 146.0 130 52.3
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 4.7e-33 144.8 161 48.4
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 1.1e-29 133.7 101 60.4
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 2.1e-28 129.4 82 74.4
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 2.7e-28 129.0 78 67.9
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 2.3e-27 125.9 129 50.4
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 2.1e-25 119.4 85 60.0
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.8e-25 119.0 99 54.5
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 1.8e-24 116.3 99 55.6
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 5.8e-23 111.3 101 50.5
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 7.6e-23 110.9 79 58.2
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 4.9e-22 108.2 84 57.1
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 3.5e-20 102.1 125 43.2
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 2.2e-14 82.8 78 44.9
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 4.9e-14 81.6 50 68.0
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 1.1e-10 70.5 130 33.1
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 1.5e-10 70.1 99 32.3
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 2.8e-09 65.9 53 54.7
QL04p008294 Quercus lobata HOM05D003957 ORTHO05D037444 2.4e-08 62.8 54 57.4
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 6.9e-08 61.2 114 31.6
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 6.9e-08 61.2 53 52.8
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.5e-07 60.1 128 31.2


User provided reference genes

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