Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 0.0e+00 1873.2 997 100.0
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 0.0e+00 1318.9 1004 74.5
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1270.8 863 76.9
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 0.0e+00 1266.5 1000 70.8
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 0.0e+00 1190.6 923 68.4
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 0.0e+00 1172.9 1004 66.7
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 0.0e+00 1168.3 984 66.7
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 0.0e+00 1161.4 990 63.6
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 0.0e+00 1156.4 914 67.4
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 0.0e+00 1154.4 959 66.6
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 0.0e+00 1139.4 1076 61.4
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 0.0e+00 1125.5 916 65.9
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 0.0e+00 1125.2 910 65.8
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 0.0e+00 1121.3 931 65.3
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 0.0e+00 1112.4 916 65.3
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 0.0e+00 1102.4 912 65.0
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 0.0e+00 1101.3 918 64.9
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 0.0e+00 1098.2 929 63.3
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 0.0e+00 1096.3 916 64.6
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 0.0e+00 1090.5 920 64.3
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 0.0e+00 1086.6 850 66.4
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 0.0e+00 1077.4 934 63.5
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 0.0e+00 1075.1 853 66.8
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 0.0e+00 1075.1 909 64.2
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 4.8e-308 1061.2 900 64.2
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 1.1e-307 1060.1 974 61.8
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 1.4e-307 1059.7 920 62.1
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.4e-307 1059.7 923 63.2
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 2.6e-306 1055.4 919 62.2
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 4.5e-306 1054.7 827 67.1
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.7e-305 1052.7 910 62.5
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 5.0e-305 1051.2 837 65.9
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.1e-304 1050.0 922 62.5
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.1e-303 1045.8 977 60.7
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.7e-303 1045.4 924 60.4
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 2.7e-303 1045.4 1004 59.7
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 8.8e-302 1040.4 929 61.7
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 1.5e-301 1039.6 930 61.0
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.6e-301 1038.9 934 60.6
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 3.4e-301 1038.5 1005 58.9
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 5.7e-301 1037.7 881 64.4
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.7e-300 1036.2 941 60.3
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 1.7e-300 1036.2 835 65.5
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.4e-299 1033.1 890 62.7
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 3.1e-299 1031.9 861 64.1
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 4.1e-299 1031.6 963 60.1
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.5e-298 1028.5 925 60.0
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 5.9e-298 1027.7 968 58.0
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 7.7e-298 1027.3 814 66.5
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.0e-297 1026.9 866 63.3
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 1.3e-297 1026.5 1009 58.4
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 1.7e-297 1026.2 922 59.7
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.2e-297 1025.8 988 58.6
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 5.0e-297 1024.6 830 65.2
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 8.5e-297 1023.8 928 61.4
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.2e-296 1020.8 692 76.3
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.3e-292 1010.0 965 59.9
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.0e-290 1002.7 921 59.6
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 5.9e-290 1001.1 815 65.9
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 3.3e-288 995.3 742 70.8
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 6.1e-287 991.1 1021 58.5
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.8e-286 989.6 925 58.9
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 4.0e-286 988.4 924 57.7
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 7.0e-283 977.6 919 59.3
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 3.9e-281 971.8 968 58.2
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.6e-279 966.5 894 58.4
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.8e-279 965.7 821 62.0
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 1.0e-278 963.8 952 56.7
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 3.4e-277 958.7 914 58.6
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 7.0e-275 951.0 861 60.0
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 1.1e-272 943.7 933 57.4
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 2.1e-271 939.5 825 61.7
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.8e-270 936.4 803 63.5
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 8.9e-270 934.1 837 61.5
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.5e-269 933.3 741 65.0
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 2.9e-268 929.1 838 61.1
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.1e-266 922.9 819 61.5
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 1.9e-264 916.4 815 61.2
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 4.7e-263 911.8 875 57.8
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.4e-262 910.2 805 61.2
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 2.3e-262 909.4 741 64.5
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 9.9e-261 904.0 879 57.5
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 1.7e-260 903.3 879 57.5
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 2.2e-260 902.9 825 58.9
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 8.4e-260 901.0 817 58.9
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 6.0e-258 894.8 834 59.0
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 5.1e-257 891.7 924 54.8
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 8.6e-257 891.0 840 58.1
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.2e-255 887.1 840 57.6
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.2e-255 887.1 840 57.6
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 4.4e-253 878.6 840 57.5
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 2.4e-246 856.3 827 57.4
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 9.3e-243 844.3 846 53.9
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 2.8e-239 832.8 841 55.6
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 6.2e-239 831.6 802 57.2
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 5.1e-233 812.0 835 54.6
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 4.8e-223 778.9 906 51.3
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 4.6e-218 762.3 829 52.6
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 9.8e-176 621.7 506 65.2
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.5e-163 581.3 893 43.4
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.1e-153 547.0 873 41.7
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.3e-151 541.6 858 41.7
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.1e-149 534.3 927 40.0
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 5.1e-148 529.6 676 48.5
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 6.6e-140 502.7 353 72.5
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 7.1e-134 482.6 557 51.3
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 2.4e-126 457.6 441 54.2
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.2e-104 385.6 226 84.1
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 6.7e-92 343.2 1010 30.9
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 2.0e-91 341.7 456 45.0
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.8e-68 265.4 197 71.6
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 5.9e-64 250.4 733 31.5
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 6.2e-45 187.2 276 40.6
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 8.0e-45 186.8 106 84.0
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.1e-44 186.4 354 47.2
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 2.0e-43 182.2 106 82.1
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 5.8e-43 180.6 233 44.2
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 3.5e-40 171.4 285 43.9
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.2e-34 152.1 166 51.8
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.7e-34 151.4 91 82.4
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.9e-22 112.5 73 72.6
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.8e-20 105.9 801 24.7
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.1e-12 80.1 46 82.6
Oeu035624.1 Olea europaea HOM05D000251 ORTHO05D007889 1.7e-10 72.8 181 39.2
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 6.4e-10 70.9 73 41.1
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.1e-09 70.1 89 40.4
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.2e-09 68.6 95 38.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.4e-09 67.8 73 39.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.1e-09 67.4 73 39.7
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 4.6e-08 64.7 67 41.8
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.9e-08 63.9 64 46.9
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 7.9e-08 63.9 89 38.2
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.0e-07 63.5 95 36.8
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.0e-07 63.5 64 46.9
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.3e-07 63.2 89 36.0
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.3e-07 63.2 89 38.2
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.8e-07 62.8 89 38.2
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.8e-07 62.8 89 38.2
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 1.8e-07 62.8 64 45.3
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.3e-07 62.4 91 38.5
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.3e-07 62.4 89 38.2
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 3.0e-07 62.0 95 35.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.0e-07 62.0 89 39.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 3.9e-07 61.6 89 40.4
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 3.9e-07 61.6 89 38.2
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.1e-07 61.2 81 39.5
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 8.7e-07 60.5 89 34.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 8.7e-07 60.5 64 43.8
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 8.7e-07 60.5 95 35.8
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 8.7e-07 60.5 89 37.1
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.1e-06 60.1 135 34.1
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.5e-06 59.7 89 37.1
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.5e-06 59.7 89 36.0
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.5e-06 59.7 89 39.3
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.9e-06 59.3 89 37.1
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 1.9e-06 59.3 66 50.0
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.9e-06 59.3 89 37.1
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 4.3e-06 58.2 64 40.6
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 4.3e-06 58.2 66 39.4
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 9.6e-06 57.0 64 39.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 9.6e-06 57.0 82 41.5


User provided reference genes

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