Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.1e-65 253.1 122 100.0
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.3e-34 149.8 121 66.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.7e-34 149.4 121 68.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.3e-34 149.1 121 66.1
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.3e-34 149.1 121 66.9
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.1e-34 147.9 121 66.1
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 6.6e-34 147.5 119 65.5
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.1e-33 146.7 111 68.5
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.5e-33 146.4 133 61.7
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.9e-33 146.0 121 64.5
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.3e-33 144.8 123 63.4
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 4.3e-33 144.8 111 68.5
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.6e-33 144.4 123 62.6
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 9.6e-33 143.7 121 64.5
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 9.6e-33 143.7 121 64.5
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 9.6e-33 143.7 121 63.6
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 9.6e-33 143.7 121 64.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.2e-32 143.3 111 67.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.6e-32 142.9 121 62.8
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.6e-32 142.9 121 64.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.6e-32 142.9 121 64.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.6e-32 142.9 121 62.8
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.1e-32 142.5 111 66.7
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.8e-32 142.1 113 66.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 3.6e-32 141.7 121 62.0
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 3.6e-32 141.7 117 64.1
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 3.6e-32 141.7 111 65.8
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.6e-32 141.7 111 65.8
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.6e-32 141.7 111 66.7
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.6e-32 141.7 111 66.7
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 3.6e-32 141.7 111 66.7
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 4.7e-32 141.4 121 63.6
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 4.7e-32 141.4 111 65.8
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 4.7e-32 141.4 111 65.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 4.7e-32 141.4 113 65.5
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 6.2e-32 141.0 111 66.7
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 6.2e-32 141.0 121 63.6
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 6.2e-32 141.0 111 65.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 8.1e-32 140.6 121 62.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.1e-31 140.2 111 66.7
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.1e-31 140.2 111 66.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.1e-31 140.2 121 62.8
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-31 140.2 121 62.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-31 140.2 111 64.9
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-31 140.2 111 64.9
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-31 140.2 111 64.9
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.4e-31 139.8 121 62.8
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.4e-31 139.8 111 64.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.4e-31 139.8 121 62.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.4e-31 139.8 121 62.0
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.4e-31 139.8 111 64.9
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.8e-31 139.4 111 64.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.4e-31 139.0 111 64.9
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.4e-31 139.0 113 66.4
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 2.4e-31 139.0 111 65.8
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 3.1e-31 138.7 111 65.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 5.2e-31 137.9 113 64.6
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 5.2e-31 137.9 111 65.8
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 5.2e-31 137.9 121 62.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.8e-31 137.5 111 64.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 6.8e-31 137.5 111 64.0
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 6.8e-31 137.5 111 64.9
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.9e-31 137.1 111 64.9
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 8.9e-31 137.1 111 64.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.2e-30 136.7 111 64.0
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.2e-30 136.7 111 64.9
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.5e-30 136.3 111 64.9
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.5e-30 136.3 111 64.0
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.5e-30 136.3 111 64.0
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.0e-30 136.0 113 65.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.0e-30 136.0 111 64.0
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 2.0e-30 136.0 111 62.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 3.4e-30 135.2 121 60.3
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.4e-30 135.2 121 59.5
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 3.4e-30 135.2 110 64.5
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 3.4e-30 135.2 111 64.0
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.4e-30 134.8 111 63.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.4e-30 134.8 113 63.7
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.4e-30 134.8 121 61.2
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.8e-30 134.4 111 63.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.8e-30 134.4 111 63.1
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.8e-30 134.4 111 63.1
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 7.6e-30 134.0 111 64.9
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 9.9e-30 133.7 111 64.0
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.3e-29 133.3 111 62.2
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.3e-29 133.3 111 63.1
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-29 133.3 111 63.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-29 133.3 114 64.9
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.2e-29 132.5 111 63.1
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.2e-29 132.5 111 62.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.2e-29 132.5 121 61.2
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 4.9e-29 131.3 111 62.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 6.4e-29 131.0 111 62.2
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 8.4e-29 130.6 111 63.1
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.1e-28 130.2 111 62.2
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.4e-28 129.8 111 63.1
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.2e-28 128.3 111 61.3
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.2e-28 128.3 111 61.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 4.2e-28 128.3 111 61.3
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.2e-28 128.3 111 61.3
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.3e-26 123.2 146 49.3
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.7e-26 122.9 111 57.7
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.0e-26 122.1 111 57.7
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.7e-26 120.6 111 55.9
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.4e-23 113.2 110 54.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-23 113.2 111 58.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-23 113.2 111 58.6
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.4e-23 112.5 111 55.9
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-23 112.1 166 42.8
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.0e-23 111.7 111 56.8
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-22 110.2 66 83.3
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 7.6e-22 107.5 97 58.8
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.8e-21 105.1 120 48.3
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.1e-20 103.6 56 85.7
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.2e-20 102.1 64 78.1
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 9.3e-20 100.5 56 82.1
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 3.5e-19 98.6 110 50.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 6.0e-19 97.8 91 56.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 6.0e-19 97.8 56 78.6
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.7e-18 96.3 122 49.2
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 5.1e-18 94.7 113 47.8
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-17 93.6 72 65.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-17 92.8 66 71.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 3.6e-16 88.6 55 72.7
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 4.8e-16 88.2 86 55.8
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 4.0e-15 85.1 56 67.9
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 9.0e-15 84.0 85 54.1
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 3.4e-14 82.0 52 75.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 9.9e-14 80.5 53 67.9
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 6.4e-13 77.8 81 54.3
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-12 76.3 81 53.1
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.4e-12 74.7 77 50.6
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.3e-10 70.1 113 41.6
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.7e-10 67.4 44 70.5
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.3e-09 65.1 42 73.8
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.4e-09 64.3 65 55.4
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.8e-07 59.7 41 63.4
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 6.9e-07 57.8 107 37.4
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.0e-07 57.4 30 86.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.5e-06 56.6 30 83.3
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 2.0e-06 56.2 30 83.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.0e-06 56.2 30 83.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 2.6e-06 55.8 30 83.3
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.4e-06 55.5 30 83.3
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 5.8e-06 54.7 30 80.0


User provided reference genes

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