Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-249 865.1 454 100.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.0e-241 837.8 454 97.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.3e-236 822.8 454 96.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 3.2e-227 791.6 454 89.6
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.5e-221 771.2 454 89.6
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.7e-220 769.2 460 87.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.9e-220 768.5 454 88.1
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 6.4e-207 724.2 490 79.8
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 5.2e-201 704.5 453 81.9
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 8.9e-201 703.7 453 82.1
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 7.1e-198 694.1 453 79.9
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.7e-196 689.5 453 81.5
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 3.0e-196 688.7 456 79.4
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.6e-196 687.6 452 79.9
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 8.6e-196 687.2 456 79.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.1e-195 686.8 452 80.8
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.2e-194 683.3 453 80.4
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.8e-194 682.2 449 80.2
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.8e-194 682.2 454 78.4
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 8.1e-194 680.6 453 79.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.4e-193 679.9 452 78.1
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.4e-193 679.1 466 76.6
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 5.2e-193 677.9 452 78.5
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 5.8e-192 674.5 461 78.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.3e-191 673.3 453 78.6
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 9.2e-190 667.2 455 77.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 2.3e-188 662.5 455 77.1
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 5.1e-188 661.4 455 78.5
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 8.7e-188 660.6 453 77.9
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.5e-187 659.1 452 76.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 4.3e-187 658.3 459 76.9
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 6.2e-186 654.4 454 76.0
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.6e-184 649.0 453 78.8
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 8.4e-183 644.0 453 75.5
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.4e-182 643.3 454 75.1
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.2e-182 642.1 455 76.0
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 4.6e-181 638.3 452 76.5
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.7e-180 636.3 454 74.0
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.3e-180 636.0 452 76.1
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.0e-180 635.6 430 78.4
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 3.9e-180 635.2 453 76.4
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 5.1e-180 634.8 454 73.8
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.9e-179 632.9 453 75.9
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.5e-179 632.5 450 74.2
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 5.6e-179 631.3 454 74.9
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.3e-178 630.2 452 75.4
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.6e-178 629.8 454 74.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.8e-178 629.0 453 72.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.4e-177 626.7 419 78.5
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.4e-177 626.7 452 74.1
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.8e-177 626.3 454 73.1
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.5e-176 623.2 452 75.4
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.4e-176 622.1 454 74.9
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 4.5e-176 621.7 426 76.5
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.7e-175 619.8 409 78.5
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.4e-174 616.7 454 73.3
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.2e-174 615.1 454 73.8
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 7.1e-174 614.4 452 72.6
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 3.5e-173 612.1 452 72.3
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.5e-171 605.9 452 72.3
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.5e-171 605.9 467 71.5
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 4.3e-171 605.1 452 73.5
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.6e-170 603.2 452 73.2
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.8e-170 602.4 464 71.1
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.8e-170 602.4 457 73.3
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.7e-170 602.1 466 68.9
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 8.1e-170 600.9 449 69.7
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.4e-169 599.4 453 72.2
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 3.1e-169 599.0 453 72.6
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 4.0e-169 598.6 459 72.1
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.3e-169 598.2 415 75.4
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 5.3e-169 598.2 394 78.9
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 4.5e-168 595.1 452 69.9
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 7.6e-168 594.3 452 69.7
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.3e-167 593.6 504 67.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.3e-167 593.6 454 70.0
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.2e-167 592.8 454 70.9
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 6.4e-167 591.3 476 69.3
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-166 590.5 452 69.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.4e-166 590.1 452 70.1
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.2e-166 589.0 461 72.5
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.2e-166 589.0 459 71.9
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 3.2e-166 589.0 454 70.9
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 4.2e-166 588.6 453 68.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 5.5e-166 588.2 452 72.1
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 7.1e-166 587.8 452 68.8
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 7.1e-166 587.8 452 69.2
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.2e-165 587.0 452 69.0
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.6e-165 586.6 452 71.9
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-165 586.6 452 68.8
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 2.7e-165 585.9 452 68.8
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 2.7e-165 585.9 460 70.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 6.0e-165 584.7 452 68.8
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 7.9e-165 584.3 452 69.5
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 6.7e-164 581.3 455 69.0
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.5e-163 579.3 452 67.5
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 9.6e-163 577.4 456 67.3
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 3.7e-162 575.5 454 69.4
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.1e-161 572.4 455 68.8
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 6.9e-161 571.2 454 69.6
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.2e-160 570.5 482 64.3
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.2e-160 570.5 453 69.3
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 2.0e-160 569.7 455 67.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 5.8e-160 568.2 452 67.7
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-158 563.9 456 67.5
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 2.5e-158 562.8 456 67.3
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 3.9e-156 555.4 481 63.8
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 8.7e-156 554.3 452 66.4
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 7.4e-155 551.2 454 66.1
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 4.1e-153 545.4 454 65.2
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 5.9e-152 541.6 459 65.1
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 3.3e-147 525.8 415 68.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.2e-144 517.3 415 67.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.0e-143 511.9 372 72.8
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.4e-142 510.4 428 65.9
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 5.5e-142 508.4 394 68.0
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 4.7e-141 505.4 428 65.9
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.8e-135 485.7 479 60.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.4e-134 483.8 508 55.5
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 6.7e-132 474.9 391 65.0
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.7e-130 470.3 453 61.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 3.5e-128 462.6 426 61.7
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 5.9e-128 461.8 344 71.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 6.5e-127 458.4 470 55.1
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.3e-122 444.1 343 69.4
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.1e-118 431.0 475 51.6
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 9.8e-115 417.9 502 47.8
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.4e-113 413.3 488 53.5
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 5.9e-112 408.7 452 53.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.0e-108 397.9 491 47.3
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-106 390.2 467 51.8
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 9.2e-97 358.2 242 73.6
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 6.0e-96 355.5 390 53.6
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 7.5e-91 338.6 345 55.9
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.4e-83 313.2 550 38.5
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.0e-79 301.6 519 40.1
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-79 300.4 377 51.2
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.4e-73 280.4 392 43.1
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-60 237.3 254 57.9
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 5.3e-60 236.1 174 69.0
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.7e-58 231.1 261 55.2
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.2e-58 230.7 128 86.7
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 8.4e-58 228.8 375 41.6
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.9e-57 227.6 178 64.6
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-55 221.5 179 63.7
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.7e-53 213.4 172 64.0
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.3e-52 209.5 231 55.4
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 6.7e-47 192.6 392 36.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 3.1e-44 183.7 270 41.9
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.3e-39 168.3 195 57.9
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.1e-36 158.7 353 35.1
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.1e-33 148.7 141 54.6
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.0e-31 140.6 109 61.5
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-29 135.2 160 54.4
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.7e-29 134.8 142 58.5
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.8e-28 131.3 146 59.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.9e-27 126.3 167 53.3
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 7.7e-27 125.9 172 46.5
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.7e-26 124.8 116 56.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.1e-22 112.1 83 75.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 3.2e-17 94.0 315 26.7
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.6e-16 91.7 57 71.9
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 2.7e-16 90.9 99 47.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 8.0e-16 89.4 200 34.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.2e-15 86.7 54 75.9
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 3.8e-10 70.5 129 44.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.9e-09 68.2 109 36.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.2e-08 65.5 46 73.9
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.7e-08 64.3 42 81.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-07 61.2 35 85.7
Actinidia22797 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.0e-07 60.8 107 42.1
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 5.2e-07 60.1 40 72.5


User provided reference genes

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