Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2906.3 1488 100.0
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2614.3 1490 89.9
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2593.5 1477 90.0
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2515.3 1544 84.1
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2504.2 1496 85.6
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2466.8 1559 82.4
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2457.2 1492 84.0
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2452.2 1491 83.4
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2427.1 1493 82.4
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2426.4 1491 82.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2425.6 1491 82.5
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2415.2 1491 82.6
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2408.6 1494 82.0
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2400.9 1496 82.0
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2400.5 1491 82.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2392.1 1488 81.1
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2384.4 1494 80.6
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2382.1 1496 80.9
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2363.2 1493 80.6
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2361.3 1493 80.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2347.0 1491 80.5
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2343.5 1494 80.3
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2341.6 1489 80.6
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2339.3 1495 79.7
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2337.8 1493 80.2
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2333.1 1531 78.4
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2331.2 1530 78.0
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2329.7 1494 79.3
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2327.0 1493 79.5
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2323.1 1489 79.6
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2323.1 1494 79.6
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2320.8 1495 79.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2320.4 1494 78.8
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2319.7 1494 78.9
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2318.1 1492 79.7
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2315.8 1491 79.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2311.6 1494 78.7
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2310.4 1492 79.3
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2309.3 1494 79.5
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2308.5 1490 79.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2308.5 1493 79.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2303.9 1495 78.4
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2303.1 1495 78.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2302.7 1494 78.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2301.2 1495 78.9
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2300.8 1495 79.3
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2298.9 1445 81.3
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2296.5 1494 78.0
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2293.1 1490 78.6
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2292.3 1489 78.4
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2292.3 1495 78.5
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2267.3 1485 78.0
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2261.5 1494 76.8
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2254.6 1485 77.7
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2246.9 1304 89.3
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2246.9 1489 76.7
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2240.3 1493 76.8
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2239.2 1492 76.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2221.4 1488 76.5
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2209.1 1495 76.5
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2207.9 1482 76.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2204.5 1493 75.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2194.1 1493 74.7
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2175.2 1486 74.6
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2172.9 1493 74.3
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2171.7 1548 73.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2169.8 1276 87.1
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2168.3 1493 74.9
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2165.2 1476 75.7
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2164.4 1490 74.8
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2160.2 1490 74.4
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1491 74.7
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2154.8 1493 73.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2145.2 1490 73.9
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2145.2 1490 73.8
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2137.5 1493 73.5
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2135.9 1503 73.5
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2135.1 1493 73.5
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1490 73.6
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2130.9 1493 74.2
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2129.4 1503 73.1
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2122.1 1491 73.4
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2122.1 1501 73.1
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2121.3 1481 73.5
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2117.4 1499 73.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2113.6 1503 72.7
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2113.6 1502 72.8
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2111.6 1488 73.1
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2111.3 1498 73.0
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2111.3 1493 73.3
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2107.8 1493 73.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2069.7 1306 82.5
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2068.5 1575 69.2
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2062.3 1302 81.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 2046.2 1387 78.4
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2037.7 1459 72.0
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 2025.0 1505 70.2
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2017.7 1594 68.8
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2008.8 1304 79.9
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1989.9 1222 84.0
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1952.6 1477 68.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1911.3 1489 66.6
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1894.0 1440 70.1
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1875.5 1373 71.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1859.7 1433 68.9
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1797.3 1436 65.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1664.0 988 84.9
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1653.3 1518 58.0
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1614.0 1531 57.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1553.5 1422 62.1
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1488.8 1087 72.9
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1474.5 1370 60.9
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1426.0 1216 61.7
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1412.5 1373 58.6
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1382.1 1307 56.9
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1201.8 1280 56.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1194.1 735 83.5
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1077.0 752 73.0
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.6e-310 1069.3 847 65.6
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.0e-278 963.4 776 68.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 4.4e-265 919.1 925 59.2
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 8.9e-258 894.8 709 66.6
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-247 861.3 579 73.4
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 7.1e-223 778.9 613 66.4
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.7e-209 732.3 598 64.5
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.2e-200 704.1 892 47.5
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.5e-191 672.9 368 86.7
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.3e-186 656.4 438 80.4
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.6e-185 654.8 743 51.7
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.3e-173 614.4 480 70.0
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.9e-163 580.1 475 65.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 6.0e-145 520.0 567 54.0
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.3e-120 439.1 774 39.5
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 3.3e-103 381.3 1740 26.7
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.3e-102 377.1 445 49.0
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.1e-98 366.3 214 87.4
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 2.1e-97 362.1 1561 27.1
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.5e-92 344.4 241 75.9
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 5.0e-91 340.9 1610 26.0
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.7e-86 324.7 352 55.7
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.5e-82 312.8 273 64.5
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.2e-80 304.3 225 68.0
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 5.3e-77 294.3 231 66.2
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 5.7e-71 274.2 152 82.2
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 3.7e-70 271.6 155 78.1
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 3.1e-69 268.5 194 70.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.8e-53 216.1 189 65.6
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.3e-46 193.4 102 89.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 7.0e-45 187.6 190 55.3
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 6.8e-40 171.0 218 52.8
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.2e-37 162.2 130 63.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 7.8e-36 157.5 130 61.5
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 8.6e-35 154.1 131 64.1
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.8e-32 144.4 340 34.1
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.2e-29 135.6 101 73.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 7.8e-28 131.0 107 63.6
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.7e-27 129.8 102 64.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.2e-23 117.1 56 91.1
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 5.8e-23 114.8 359 28.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.4e-21 108.2 65 73.8
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.1e-21 107.8 67 76.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.3e-18 97.8 174 39.7
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.8e-17 95.1 70 65.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 6.9e-16 91.3 53 83.0
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 6.9e-16 91.3 53 83.0
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.6e-15 89.4 112 51.8
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 7.3e-10 71.2 54 66.7
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.6e-09 68.9 34 85.3
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.2e-07 63.9 36 88.9
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 4.9e-06 58.5 150 28.7
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 8.4e-06 57.8 53 54.7


User provided reference genes

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