Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 4.9e-282 973.8 477 100.0
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.3e-220 767.7 477 78.2
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.5e-214 748.8 478 76.6
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 4.3e-214 748.0 479 76.8
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.1e-206 723.4 477 75.3
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 5.1e-199 698.0 479 73.1
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.7e-194 682.9 477 69.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.5e-194 681.0 472 70.6
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 1.9e-193 679.5 480 69.4
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 2.5e-193 679.1 477 70.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 4.7e-192 674.9 480 69.2
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 7.9e-192 674.1 478 70.5
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.0e-191 673.7 475 70.7
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 1.8e-191 672.9 477 69.6
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 3.0e-191 672.2 477 69.2
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 5.1e-191 671.4 478 69.5
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.1e-190 670.2 481 68.8
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.1e-190 670.2 477 69.0
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 5.7e-190 667.9 482 69.7
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 9.7e-190 667.2 487 68.8
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 9.7e-190 667.2 477 69.4
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.8e-188 662.9 479 69.9
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 1.8e-188 662.9 482 69.3
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 4.1e-188 661.8 479 68.9
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 2.0e-187 659.4 477 67.7
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 5.9e-187 657.9 477 67.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 7.7e-187 657.5 477 67.5
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 1.7e-186 656.4 477 67.1
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 2.2e-186 656.0 492 66.5
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 2.2e-186 656.0 480 69.2
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 3.8e-186 655.2 474 68.1
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 6.5e-186 654.4 474 68.6
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 1.9e-185 652.9 481 67.4
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 2.7e-184 649.0 477 66.0
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 6.1e-184 647.9 484 66.1
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 1.8e-183 646.4 483 66.7
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 5.2e-183 644.8 477 66.9
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 1.5e-182 643.3 479 68.1
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 2.0e-182 642.9 477 67.9
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 3.7e-181 638.6 479 68.1
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 8.2e-181 637.5 480 66.7
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 4.1e-180 635.2 486 64.4
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.7e-179 632.5 477 64.8
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 4.5e-179 631.7 478 65.5
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 4.5e-179 631.7 486 64.2
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 7.7e-179 630.9 486 63.6
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 2.2e-178 629.4 477 66.5
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 6.5e-178 627.9 486 64.0
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 6.5e-178 627.9 477 65.0
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.5e-177 626.7 478 65.7
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.5e-177 626.7 476 64.9
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 2.5e-177 625.9 488 63.7
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 3.2e-177 625.5 488 63.7
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 3.2e-177 625.5 484 64.9
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 3.2e-177 625.5 488 63.5
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 4.2e-177 625.2 486 64.2
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 4.2e-177 625.2 483 63.8
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 4.2e-177 625.2 474 65.6
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 7.2e-177 624.4 488 64.1
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 1.2e-176 623.6 474 65.8
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 1.2e-176 623.6 477 66.2
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 1.6e-176 623.2 477 65.4
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 1.6e-176 623.2 488 66.6
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 2.7e-176 622.5 476 65.3
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 3.6e-176 622.1 488 63.7
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 4.0e-175 618.6 477 65.8
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 8.8e-175 617.5 474 66.7
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 3.4e-174 615.5 474 65.2
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.3e-173 613.6 486 65.4
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.7e-173 613.2 477 64.8
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 1.4e-172 610.1 478 65.1
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 7.0e-172 607.8 501 62.9
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 4.0e-167 592.0 477 64.8
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 5.2e-167 591.7 477 62.3
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 5.0e-162 575.1 477 61.8
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 8.6e-162 574.3 488 59.6
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.0e-159 567.4 482 60.0
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 8.9e-159 564.3 477 61.2
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.2e-156 555.8 457 58.4
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 9.2e-156 554.3 494 59.3
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 1.5e-153 547.0 443 62.8
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.6e-150 536.2 374 69.8
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 2.1e-144 516.5 319 79.0
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 2.0e-142 510.0 383 63.4
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 2.1e-136 490.0 380 65.3
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 8.4e-133 478.0 473 50.5
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 3.9e-130 469.2 338 68.9
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 6.6e-130 468.4 299 79.9
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 6.9e-127 458.4 316 69.9
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 8.4e-125 451.4 420 50.5
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 4.8e-120 435.6 497 45.1
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.0e-114 416.4 255 78.4
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 1.0e-106 391.3 430 48.4
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.6e-99 367.5 319 61.1
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 5.1e-98 362.5 270 67.4
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 9.6e-97 358.2 385 47.5
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 6.3e-96 355.5 383 46.0
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.1e-95 354.8 277 66.1
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 3.4e-94 349.7 360 49.4
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 2.2e-93 347.1 259 65.6
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 1.4e-92 344.4 443 41.8
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 4.5e-86 322.8 239 65.7
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.9e-85 320.1 251 65.3
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 3.2e-84 316.6 446 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 5.5e-84 315.8 400 40.8
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.4e-71 274.6 210 61.9
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 1.7e-69 267.7 205 66.8
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 2.7e-62 243.8 236 55.1
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 2.7e-54 217.2 188 54.3
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 3.5e-54 216.9 191 61.8
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 3.4e-49 200.3 126 73.8
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 9.2e-47 192.2 118 77.1
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 1.5e-44 184.9 116 76.7
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 1.7e-29 134.8 110 64.5
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 3.6e-27 127.1 100 61.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 2.0e-25 121.3 117 53.0
Actinidia26749 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.2e-11 75.5 46 78.3
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 8.1e-11 72.8 204 29.9
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 1.8e-10 71.6 204 29.9
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 2.6e-09 67.8 44 70.5
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 1.6e-06 58.5 52 59.6
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 1.6e-06 58.5 52 59.6
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 6.0e-06 56.6 31 80.6


User provided reference genes

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