Gene: AT5G63290

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G63290
  • Transcript Identifier AT5G63290.1
  • Gene Type Coding gene
  • Location Chr5 : 25369349-25370894 : negative

Gene Family Information

  • ID HOM05D006543
  • #Genes/#Species 122/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G63290.1
  • uniprot Q9FMJ4

Descriptions

  • Description Radical SAM superfamily protein
  • Computational description Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006779
IEA
GOA Databaseporphyrin-containing compound biosynthetic process
GO:0006779
IBA
Gene Ontologyporphyrin-containing compound biosynthetic process1
GO:0006779
IEA
InterProporphyrin-containing compound biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004109
IEA
Gene Ontologycoproporphyrinogen oxidase activity
GO:0004109
IEA
InterProcoproporphyrinogen oxidase activity
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IBA
Gene Ontology4 iron, 4 sulfur cluster binding1
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004559 Heme chaperone HemW-like
IPR007197 Radical SAM
IPR006638 Elp3/MiaB/NifB
IPR023404 Radical SAM, alpha/beta horseshoe
IPR034505 Anaerobic coproporphyrinogen-III oxidase
Mapman id Description
7.12.4.2.2 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.oxygen-independent coproporphyrinogen III oxidase (HemN)