Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 0.0e+00 1775.4 900 100.0
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1389.4 900 81.1
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 0.0e+00 1385.2 711 98.7
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 0.0e+00 1323.5 901 76.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 0.0e+00 1221.8 915 71.7
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 0.0e+00 1174.8 867 72.0
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 0.0e+00 1097.4 905 64.0
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 0.0e+00 1079.3 909 65.5
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 0.0e+00 1078.2 958 61.3
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1075.1 907 63.8
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 4.7e-310 1067.8 907 63.5
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 5.3e-306 1054.3 908 62.4
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 5.3e-306 1054.3 911 62.3
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 4.7e-302 1041.2 907 62.7
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 7.0e-298 1027.3 910 61.9
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 6.1e-294 1014.2 896 60.8
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.0e-292 1009.2 750 71.2
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.0e-292 1009.2 893 61.8
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.3e-291 1006.5 897 60.1
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 1.0e-288 996.9 902 60.6
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 8.0e-286 987.3 897 59.3
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.2e-284 983.4 909 59.0
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 3.4e-284 981.9 897 59.2
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 4.4e-284 981.5 908 58.7
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 1.3e-283 979.9 894 58.9
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 7.7e-281 970.7 869 61.0
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 1.0e-280 970.3 883 59.5
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 3.3e-279 965.3 897 59.5
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.0e-277 960.3 870 60.9
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.5e-276 956.4 904 58.4
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 3.4e-276 955.3 899 58.4
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 9.8e-276 953.7 915 58.5
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 9.8e-276 953.7 869 59.8
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 2.7e-273 945.7 870 60.2
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.6e-273 944.9 870 60.1
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 1.5e-271 939.9 903 57.8
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 5.6e-271 937.9 868 59.9
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 8.0e-270 934.1 909 57.5
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 2.3e-269 932.6 906 57.3
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.2e-266 920.6 920 56.5
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 6.0e-265 917.9 913 55.9
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 6.6e-264 914.4 866 58.4
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 1.5e-263 913.3 905 56.7
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 1.9e-263 912.9 885 56.9
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.9e-263 912.9 895 56.0
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.9e-263 912.9 873 58.2
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.9e-263 912.9 917 56.4
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 3.3e-263 912.1 906 54.5
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-262 910.2 944 55.3
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.6e-262 909.8 889 56.4
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 1.1e-261 907.1 885 56.7
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.8e-261 906.4 883 57.6
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 5.2e-261 904.8 879 56.7
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.5e-260 903.3 872 57.6
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.5e-260 903.3 897 56.1
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 7.1e-258 894.4 906 54.5
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 4.6e-257 891.7 911 55.2
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 5.1e-256 888.3 898 56.2
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.9e-255 886.3 866 57.0
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 1.1e-253 880.6 901 55.7
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.2e-252 877.1 910 54.6
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 5.8e-252 874.8 867 55.9
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.2e-251 872.8 870 55.3
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 1.9e-250 869.8 926 53.2
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 7.8e-249 864.4 715 66.2
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.3e-248 863.6 811 58.6
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 3.9e-248 862.1 867 54.7
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.5e-247 859.4 888 54.6
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 2.8e-246 855.9 863 54.5
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.1e-245 854.0 873 55.6
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 3.2e-242 842.4 875 55.3
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 3.5e-241 839.0 897 53.3
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 1.6e-238 830.1 886 54.6
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 6.2e-238 828.2 872 54.4
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 2.6e-236 822.8 891 53.2
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 1.4e-234 817.0 922 50.9
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 6.9e-229 798.1 892 51.5
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 2.4e-226 789.6 864 50.8
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 6.7e-224 781.6 870 50.7
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.9e-223 780.0 863 50.8
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 3.7e-222 775.8 699 59.9
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.1e-221 774.2 910 48.6
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 5.8e-220 768.5 861 49.2
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 1.7e-219 766.9 891 49.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.2e-219 766.5 932 47.9
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 1.4e-218 763.8 891 51.0
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 3.3e-215 752.7 955 46.6
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 1.6e-214 750.4 871 48.7
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 2.1e-214 750.0 935 47.5
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 5.3e-213 745.3 904 48.9
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 4.5e-212 742.3 878 49.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.9e-211 739.6 876 48.7
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 3.8e-211 739.2 888 48.3
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 4.8e-206 722.2 959 44.9
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.4e-205 720.7 871 48.0
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 2.6e-196 689.9 877 48.1
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.0e-195 688.0 615 60.5
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 2.9e-195 686.4 747 52.9
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 4.8e-190 669.1 955 44.3
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.6e-185 654.1 678 53.5
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 7.0e-165 585.5 729 49.4
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 7.3e-162 575.5 976 38.9
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.6e-156 556.2 871 40.8
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 9.5e-154 548.5 883 40.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.1e-153 547.4 951 39.4
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 4.4e-143 513.1 864 39.0
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.3e-134 485.0 486 55.1
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 6.7e-115 419.5 1011 32.0
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.1e-96 359.0 459 47.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.8e-65 254.6 890 27.8
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 2.5e-53 214.9 183 57.4
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.8e-51 208.8 861 24.6
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.2e-44 186.0 416 30.5
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.2e-34 152.9 268 36.6
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.3e-30 139.4 145 53.8
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.9e-29 135.6 313 31.3
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 5.8e-26 124.0 127 52.0
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.1e-24 119.8 249 29.3
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-18 99.8 85 61.2
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.9e-18 96.7 161 29.8
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 1.2e-15 89.7 90 51.1
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 6.0e-15 87.4 112 44.6
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 5.4e-08 64.3 130 35.4
GSVIVG01023078001 Vitis vinifera HOM05D000241 ORTHO05D440677 3.0e-06 58.5 44 61.4


User provided reference genes

Program Settings