Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033958 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 4.1e-120 434.9 242 100.0
CSS0043771 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 4.1e-120 434.9 242 98.3
CSS0031096 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.6e-119 433.0 242 99.6
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 1.3e-89 333.6 212 86.8
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 6.4e-89 331.3 212 82.1
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 1.1e-88 330.5 212 79.7
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 1.6e-87 326.6 212 77.8
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 3.5e-87 325.5 220 82.3
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 4.6e-87 325.1 214 82.7
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 1.3e-86 323.6 213 77.5
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 5.1e-86 321.6 212 77.4
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 8.7e-86 320.9 214 76.6
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 1.1e-85 320.5 225 79.1
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 1.1e-85 320.5 225 79.1
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 1.5e-85 320.1 212 83.0
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.9e-85 319.7 223 77.6
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 3.3e-85 318.9 214 83.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 7.3e-85 317.8 210 79.0
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 7.3e-85 317.8 212 77.8
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 2.8e-84 315.8 213 75.6
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 2.8e-84 315.8 212 76.9
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 1.1e-83 313.9 213 76.1
TPR.G10404 Trifolium pratense HOM05D000283 ORTHO05D004861 1.8e-83 313.2 213 75.1
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 2.4e-83 312.8 223 79.4
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 3.1e-83 312.4 212 76.4
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 4.0e-83 312.0 216 83.3
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 5.3e-83 311.6 210 84.3
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 5.3e-83 311.6 213 76.5
Actinidia29196 Actinidia chinensis HOM05D000283 ORTHO05D004861 9.0e-83 310.8 246 75.2
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 9.0e-83 310.8 213 74.6
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 1.5e-82 310.1 229 78.6
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 4.4e-82 308.5 212 75.5
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 4.4e-82 308.5 225 81.8
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 7.6e-82 307.8 214 81.8
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 9.9e-82 307.4 185 85.4
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 1.3e-81 307.0 213 77.0
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 1.7e-81 306.6 183 84.7
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 2.9e-81 305.8 212 75.5
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 2.9e-81 305.8 218 83.0
Psat6g239360 Pisum sativum HOM05D000283 ORTHO05D004861 6.4e-81 304.7 213 72.3
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 2.4e-80 302.8 213 77.0
Manes.07G106200 Manihot esculenta HOM05D000283 ORTHO05D004861 4.2e-80 302.0 213 74.2
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 4.2e-80 302.0 212 74.1
Sabra08G0033500 Salix brachista HOM05D000283 ORTHO05D004861 4.2e-80 302.0 212 74.5
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 5.4e-80 301.6 213 73.7
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 7.1e-80 301.2 213 73.7
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 7.1e-80 301.2 214 79.4
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 1.6e-79 300.1 214 73.4
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 1.6e-79 300.1 216 79.6
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 1.6e-79 300.1 216 79.6
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 2.1e-79 299.7 211 74.4
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 2.1e-79 299.7 182 83.0
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 3.5e-79 298.9 213 73.7
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 4.6e-79 298.5 221 71.9
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 4.6e-79 298.5 216 77.8
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.7e-78 296.6 221 71.5
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 3.0e-78 295.8 212 70.8
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 3.0e-78 295.8 212 70.8
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 3.0e-78 295.8 212 76.4
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 5.1e-78 295.0 215 71.2
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 5.1e-78 295.0 213 77.5
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 6.6e-78 294.7 210 77.6
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 8.7e-78 294.3 212 79.2
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.1e-77 293.9 220 71.4
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 1.1e-77 293.9 179 83.8
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 1.1e-77 293.9 179 83.8
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 1.5e-77 293.5 214 70.6
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 1.9e-77 293.1 182 78.0
Sc20g0002340 Simmondsia chinensis HOM05D000283 ORTHO05D004861 3.3e-77 292.4 215 75.8
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 3.3e-77 292.4 219 76.7
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 4.3e-77 292.0 213 72.3
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 4.3e-77 292.0 213 72.3
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 4.3e-77 292.0 222 78.4
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 5.6e-77 291.6 214 76.2
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 5.6e-77 291.6 183 82.0
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 7.3e-77 291.2 176 84.7
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 7.3e-77 291.2 179 83.2
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 9.6e-77 290.8 183 81.4
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 2.1e-76 289.7 184 77.7
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 2.8e-76 289.3 213 70.4
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 6.2e-76 288.1 219 74.4
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 6.2e-76 288.1 214 71.0
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 3.1e-75 285.8 178 79.2
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 1.2e-74 283.9 214 69.2
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 1.5e-74 283.5 184 79.9
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 2.0e-74 283.1 213 69.5
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 3.4e-74 282.3 212 67.9
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 3.4e-74 282.3 212 67.9
Duzib114G0902 Durio zibethinus HOM05D000283 ORTHO05D004861 4.5e-74 282.0 184 79.3
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 4.5e-74 282.0 219 68.5
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 5.8e-74 281.6 219 68.0
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 7.6e-74 281.2 212 67.9
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 9.9e-74 280.8 220 70.9
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 9.9e-74 280.8 220 73.6
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 1.3e-73 280.4 209 71.3
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 1.3e-73 280.4 212 67.5
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 1.3e-73 280.4 212 67.5
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 1.3e-73 280.4 212 67.5
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 1.3e-73 280.4 212 67.5
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 2.2e-73 279.6 176 83.0
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 2.9e-73 279.3 182 80.2
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 3.8e-73 278.9 212 67.0
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 3.8e-73 278.9 212 67.9
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 3.8e-73 278.9 220 69.1
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 8.4e-73 277.7 265 59.6
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 1.4e-72 276.9 212 66.5
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 5.4e-72 275.0 209 67.5
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 3.5e-71 272.3 209 66.5
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 4.6e-71 271.9 212 67.9
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 6.0e-71 271.6 213 65.3
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 1.3e-70 270.4 210 66.2
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 1.3e-70 270.4 221 72.4
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 2.3e-70 269.6 213 64.3
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 2.3e-70 269.6 209 66.0
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 3.0e-70 269.2 209 65.6
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 3.0e-70 269.2 183 73.8
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 3.0e-70 269.2 183 73.8
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 8.7e-70 267.7 209 65.6
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 1.9e-69 266.5 212 67.0
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 2.5e-69 266.2 184 74.5
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 6.2e-68 261.5 212 64.2
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 1.8e-67 260.0 181 74.0
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 3.1e-67 259.2 182 73.6
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.0e-66 256.5 169 77.5
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 9.3e-64 247.7 177 68.9
SHI28210 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-62 244.2 220 57.7
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 2.9e-57 226.1 179 63.1
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 6.5e-57 224.9 198 60.6
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.4e-56 223.8 181 62.4
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.9e-56 223.4 182 61.0
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 2.1e-55 219.9 182 63.7
BcaB05g23770 Brassica carinata HOM05D000283 ORTHO05D004861 1.8e-51 206.8 185 61.1
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 2.4e-51 206.5 174 70.1
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 2.2e-49 199.9 178 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 1.1e-48 197.6 215 49.3
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 1.9e-48 196.8 179 58.1
BcaB04g19121 Brassica carinata HOM05D000283 ORTHO05D004861 4.2e-48 195.7 184 59.8
Ah.16g108160 Amaranthus hybridus HOM05D000283 ORTHO05D004861 4.5e-42 175.6 107 79.4
MD01G1115600 Malus domestica HOM05D000283 ORTHO05D004861 3.2e-40 169.5 154 59.1
SMO111G0010 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 1.1e-37 161.0 173 49.1
Actinidia38228 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.1e-31 140.2 213 47.4
Haze_27231 Corylus avellana HOM05D000283 ORTHO05D004861 4.5e-26 122.5 176 40.9
CDE05G1554 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 5.0e-25 119.0 143 49.0
BcaB02g07699 Brassica carinata HOM05D000283 ORTHO05D004861 7.2e-24 115.2 214 36.4
Cfa024562 Carpinus fangiana HOM05D000283 ORTHO05D004861 7.2e-24 115.2 202 34.7
Manes.03G138852 Manihot esculenta HOM05D000283 ORTHO05D004861 1.6e-23 114.0 81 70.4
Manes.03G138849 Manihot esculenta HOM05D000283 ORTHO05D004861 4.0e-22 109.4 80 68.8
Cre03.g144867 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D004861 1.0e-14 84.7 279 28.7
MBI15_g43999_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 3.1e-11 73.2 43 76.7
PRCOL_00005225 Prasinoderma coloniale HOM05D000283 ORTHO05D004861 9.2e-11 71.6 217 29.5
RcHm_v2.0_Chr5g0057291 Rosa chinensis HOM05D000283 ORTHO05D004861 3.8e-09 66.2 43 69.8
BcaC08g44722 Brassica carinata HOM05D000283 ORTHO05D032771 7.3e-08 62.0 41 70.7
CBR_g863 Chara braunii HOM05D000283 ORTHO05D004861 1.0e-06 58.2 42 57.1
HanXRQChr03g0094061 Helianthus annuus HOM05D000283 ORTHO05D223961 1.8e-06 57.4 49 59.2


User provided reference genes

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