Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033732 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 1.8e-263 912.1 491 100.0
CSS0030184 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 3.4e-254 881.3 491 97.8
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 1.9e-127 460.3 411 62.3
Actinidia20024 Actinidia chinensis HOM05D000104 ORTHO05D006071 7.8e-126 454.9 569 49.7
vmacro23146 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 1.7e-117 427.2 332 67.8
vmacro23048 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 8.6e-117 424.9 332 67.5
Hma1.2p1_0512F.1_g169270 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 1.2e-78 298.1 490 44.5
GSVIVG01026450001 Vitis vinifera HOM05D000104 ORTHO05D006071 3.0e-77 293.5 325 53.2
Haze_25321 Corylus avellana HOM05D000104 ORTHO05D006071 3.8e-72 276.6 502 39.8
TAR628G1730 Trochodendron aralioides HOM05D000104 ORTHO05D006071 4.2e-71 273.1 325 49.8
Cfa002182 Carpinus fangiana HOM05D000104 ORTHO05D006071 9.7e-68 261.9 502 37.8
Ciclev10000096m.g Citrus clementina HOM05D000104 ORTHO05D006071 1.8e-66 257.7 382 43.2
QL10p041777 Quercus lobata HOM05D000104 ORTHO05D006071 1.5e-65 254.6 507 38.9
Prupe.4G275700 Prunus persica HOM05D000104 ORTHO05D006071 1.3e-64 251.5 410 42.2
CiPaw.04G080100 Carya illinoinensis HOM05D000104 ORTHO05D006071 6.5e-64 249.2 502 37.5
Oeu009636.2 Olea europaea HOM05D000104 ORTHO05D006071 1.1e-63 248.4 460 39.3
AUR62000507 Chenopodium quinoa HOM05D000104 ORTHO05D006071 1.0e-61 241.9 454 40.5
MSTRG.16996 Avicennia marina HOM05D000104 ORTHO05D006071 2.6e-60 237.3 503 37.6
Hund21803 Selenicereus undatus HOM05D000104 ORTHO05D006071 1.3e-59 235.0 411 41.1
Lj2C614G7 Lonicera japonica HOM05D000104 ORTHO05D006071 1.4e-58 231.5 454 36.8
EL10Ac4g09611 Beta vulgaris HOM05D000104 ORTHO05D006071 5.0e-56 223.0 461 40.8
RcHm_v2.0_Chr2g0122191 Rosa chinensis HOM05D000104 ORTHO05D006071 3.2e-55 220.3 309 46.3
TWI31G0382 Tripterygium wilfordii HOM05D000104 ORTHO05D006071 2.7e-54 217.2 534 39.0
AUR62006852 Chenopodium quinoa HOM05D000104 ORTHO05D006071 6.1e-54 216.1 454 37.9
Gohir.D09G003600 Gossypium hirsutum HOM05D000104 ORTHO05D006071 1.8e-53 214.5 338 42.0
SGA_v2.0_scaffold212G42200 Striga asiatica HOM05D000104 ORTHO05D006071 3.0e-53 213.8 490 35.3
Nitab4.5_0000316g0170 Nicotiana tabacum HOM05D000104 ORTHO05D006071 2.0e-52 211.1 515 38.4
Gohir.A09G004100 Gossypium hirsutum HOM05D000104 ORTHO05D006071 3.3e-52 210.3 339 41.3
CAN.G410.42 Capsicum annuum HOM05D000104 ORTHO05D006071 9.7e-52 208.8 347 42.7
Cc02_g29430 Coffea canephora HOM05D000104 ORTHO05D006071 1.3e-51 208.4 490 38.4
Nn1g08948 Nelumbo nucifera HOM05D000104 ORTHO05D006071 2.0e-49 201.1 348 42.8
CANSAT01G0184 Cannabis sativa HOM05D000104 ORTHO05D006071 5.9e-49 199.5 310 42.9
Solyc01g068280.3 Solanum lycopersicum HOM05D000104 ORTHO05D006071 6.5e-48 196.1 557 35.9
DCAR_020007 Daucus carota HOM05D000104 ORTHO05D006071 8.5e-48 195.7 531 33.7
Nitab4.5_0006307g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006071 1.1e-47 195.3 313 42.2
FvH4_1g24690 Fragaria vesca HOM05D000104 ORTHO05D006071 1.5e-47 194.9 317 42.9
FAN26G2158 Fragaria x ananassa HOM05D000104 ORTHO05D006071 1.5e-47 194.9 312 42.3
MD15G1135700 Malus domestica HOM05D000104 ORTHO05D006071 1.9e-47 194.5 316 41.1
Sc09g0002280 Simmondsia chinensis HOM05D000104 ORTHO05D006071 3.2e-47 193.7 468 36.1
Nn5g28449 Nelumbo nucifera HOM05D000104 ORTHO05D006071 4.2e-47 193.4 343 40.2
Ah.04g157970 Amaranthus hybridus HOM05D000104 ORTHO05D006071 9.4e-47 192.2 460 36.5
SalBow5G2719 Salvia bowleyana HOM05D000104 ORTHO05D006071 9.4e-47 192.2 485 33.4
Thecc.01G133200 Theobroma cacao HOM05D000104 ORTHO05D006071 9.4e-47 192.2 484 34.1
Peaxi162Scf00087g00224 Petunia axillaris HOM05D000104 ORTHO05D006071 1.2e-46 191.8 545 33.0
Gorai.006G005000 Gossypium raimondii HOM05D000104 ORTHO05D006071 1.6e-46 191.4 482 33.2
Migut.B01201 Erythranthe guttata HOM05D000104 ORTHO05D006071 3.6e-46 190.3 533 33.8
FAN19G1002 Fragaria x ananassa HOM05D000104 ORTHO05D006071 3.6e-46 190.3 318 42.5
Sopen01g030220 Solanum pennellii HOM05D000104 ORTHO05D006071 4.7e-46 189.9 556 36.0
COL.COLO4_35752 Corchorus olitorius HOM05D000104 ORTHO05D006071 3.0e-45 187.2 336 40.2
Atru.chr4.943 Acer truncatum HOM05D000104 ORTHO05D006071 2.2e-43 181.0 539 31.2
Cpa.g.c40991 Carica papaya HOM05D000104 ORTHO05D006071 6.3e-43 179.5 348 39.1
MELO3C024599.2 Cucumis melo HOM05D000104 ORTHO05D006071 8.3e-43 179.1 331 39.0
Hma1.2p1_2601F.1_g325200 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 8.3e-43 179.1 292 39.7
Potri.007G102800 Populus trichocarpa HOM05D000104 ORTHO05D006071 4.1e-42 176.8 395 35.7
Potri.005G066600 Populus trichocarpa HOM05D000104 ORTHO05D006071 1.2e-41 175.3 509 34.4
Manes.13G085000 Manihot esculenta HOM05D000104 ORTHO05D006071 2.0e-41 174.5 299 40.1
ECA240G1465 Erigeron canadensis HOM05D000104 ORTHO05D006071 1.1e-39 168.7 311 40.2
QL10p041836 Quercus lobata HOM05D000104 ORTHO05D006071 1.1e-39 168.7 298 39.6
CsaV3_6G041230 Cucumis sativus L. HOM05D000104 ORTHO05D006071 1.9e-39 167.9 330 38.2
Sed0020852 Sechium edule HOM05D000104 ORTHO05D006071 3.2e-39 167.2 332 38.3
arahy.Tifrunner.gnm1.ann1.H21J0D Arachis hypogaea HOM05D000104 ORTHO05D006071 1.6e-38 164.9 452 32.7
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 2.7e-38 164.1 447 32.4
HanXRQChr13g0423701 Helianthus annuus HOM05D000104 ORTHO05D006071 1.8e-37 161.4 323 36.5
Lsat_1_v5_gn_3_126201 Lactuca sativa HOM05D000104 ORTHO05D006071 1.8e-37 161.4 464 32.8
Sabra07G0084400 Salix brachista HOM05D000104 ORTHO05D006071 3.0e-37 160.6 393 34.4
THA.LOC104800148 Tarenaya hassleriana HOM05D000104 ORTHO05D006071 2.6e-36 157.5 393 33.6
ClCG01G015120 Citrullus lanatus HOM05D000104 ORTHO05D006071 3.4e-36 157.1 365 32.9
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 7.5e-36 156.0 393 32.3
PGR102G2777 Punica granatum HOM05D000104 ORTHO05D006071 1.3e-35 155.2 513 31.2
C03p62400 Brassica napus HOM05D000104 ORTHO05D006071 7.0e-34 149.4 395 34.7
Aqoxy6G00301 Aquilegia oxysepala HOM05D000104 ORTHO05D006071 1.2e-33 148.7 340 37.9
Eucgr.H05148 Eucalyptus grandis HOM05D000104 ORTHO05D006071 4.5e-33 146.7 508 29.3
Carub.0008s2473 Capsella rubella HOM05D000104 ORTHO05D006071 2.3e-32 144.4 387 33.9
Phvul.002G274300 Phaseolus vulgaris HOM05D000104 ORTHO05D006071 1.1e-31 142.1 468 31.4
CARHR277860 Cardamine hirsuta HOM05D000104 ORTHO05D006071 1.5e-31 141.7 374 33.7
CDE04G0721 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 2.5e-31 141.0 317 34.4
Lalb_Chr12g0203051 Lupinus albus HOM05D000104 ORTHO05D006071 3.3e-31 140.6 455 30.3
MBI03_g13493_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006071 3.3e-31 140.6 306 37.3
TPR.G37376 Trifolium pratense HOM05D000104 ORTHO05D006071 4.3e-31 140.2 311 34.7
SHI11494 Sapria himalayana HOM05D000104 ORTHO05D006071 1.2e-30 138.7 310 36.1
Sp2g27010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 1.2e-30 138.7 336 35.4
A06p30560 Brassica napus HOM05D000104 ORTHO05D006071 1.6e-30 138.3 393 33.6
BraA06t26005Z Brassica rapa HOM05D000104 ORTHO05D006071 1.6e-30 138.3 393 33.6
Medtr8g094070 Medicago truncatula HOM05D000104 ORTHO05D006071 4.7e-30 136.7 317 33.4
Ca_17624_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 8.0e-30 136.0 513 32.4
BcaC01g02649 Brassica carinata HOM05D000104 ORTHO05D006071 1.0e-29 135.6 396 34.8
BolC3t18499H Brassica oleracea HOM05D000104 ORTHO05D006071 1.0e-29 135.6 399 33.8
CDE12G0860 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 1.4e-29 135.2 312 33.3
PSO528G0238 Papaver somniferum HOM05D000104 ORTHO05D006071 1.8e-29 134.8 336 33.6
AT5G63950 Arabidopsis thaliana HOM05D000104 ORTHO05D006071 3.0e-29 134.0 388 32.7
VMungo0251G3768 Vigna mungo HOM05D000104 ORTHO05D006071 3.0e-29 134.0 504 28.8
BcaC01g02651 Brassica carinata HOM05D000104 ORTHO05D006071 4.0e-29 133.7 382 34.6
PSO170G5372 Papaver somniferum HOM05D000104 ORTHO05D006071 4.0e-29 133.7 334 34.1
AL8G41210 Arabidopsis lyrata HOM05D000104 ORTHO05D006071 8.9e-29 132.5 443 31.2
BcaB02g09760 Brassica carinata HOM05D000104 ORTHO05D006071 3.4e-28 130.6 385 33.5
Thhalv10003558m.g Eutrema salsugineum HOM05D000104 ORTHO05D006071 5.7e-28 129.8 376 31.6
Aa31LG1G17950 Aethionema arabicum HOM05D000104 ORTHO05D006071 7.5e-28 129.4 325 35.4
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 1.7e-27 128.3 311 34.1
Glyma.08G001900 Glycine max HOM05D000104 ORTHO05D006071 2.2e-27 127.9 475 28.6
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 2.9e-27 127.5 451 35.7
unitig_26.g9608 Utricularia gibba HOM05D000104 ORTHO05D006071 1.2e-22 112.1 318 31.1
MD15G1135400 Malus domestica HOM05D000104 ORTHO05D006071 2.3e-21 107.8 71 66.2
Glyma.05G193900 Glycine max HOM05D000104 ORTHO05D006071 2.4e-18 97.8 133 42.1
Os04g0692750 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 2.7e-17 94.4 302 30.1
ATR0188G008 Amborella trichopoda HOM05D000104 ORTHO05D006071 4.6e-17 93.6 309 28.2
Zm00001eb076670 Zea mays HOM05D000104 ORTHO05D006071 4.6e-17 93.6 336 28.6
Lsat_1_v5_gn_3_126241 Lactuca sativa HOM05D000104 ORTHO05D006071 3.0e-16 90.9 304 28.0
Medtr8g094080 Medicago truncatula HOM05D000104 ORTHO05D006071 3.0e-16 90.9 73 60.3
Lj4g0017230 Lotus japonicus HOM05D000104 ORTHO05D006071 5.6e-15 86.7 76 56.6
SEGI_39157 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 9.5e-15 85.9 110 40.0
Eucgr.C01558 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.6e-14 85.1 54 70.4
Pp3c2_11030 Physcomitrium patens HOM05D000104 ORTHO05D006071 6.2e-14 83.2 269 28.6
HPP92_000084 Vanilla planifolia HOM05D000104 ORTHO05D006071 8.1e-14 82.8 161 38.5
Actinidia06573 Actinidia chinensis HOM05D000104 ORTHO05D053007 4.9e-11 73.6 75 57.3
AagrBONN_evm.TU.Sc2ySwM_340.353 Anthoceros agrestis HOM05D000104 ORTHO05D006071 5.4e-10 70.1 94 44.7
SEGI_32379 Sequoiadendron giganteum HOM05D000104 ORTHO05D008568 5.4e-10 70.1 150 31.3
Pp3c14_20620 Physcomitrium patens HOM05D000104 ORTHO05D006071 3.5e-09 67.4 60 50.0
SMO146G0288 Selaginella moellendorffii HOM05D000104 ORTHO05D006071 3.5e-09 67.4 40 62.5
CBR_g37246 Chara braunii HOM05D000104 ORTHO05D006071 2.3e-08 64.7 95 42.1
Os01g0102800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D008568 3.9e-08 63.9 93 35.5
Os04g0692700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 5.1e-08 63.5 38 63.2
Zm00001eb127010 Zea mays HOM05D000104 ORTHO05D008568 5.1e-08 63.5 94 37.2
Pp3c15_23590 Physcomitrium patens HOM05D000104 ORTHO05D008568 1.9e-07 61.6 112 34.8
Os01g0636700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 2.5e-07 61.2 75 42.7
COL.COLO4_04021 Corchorus olitorius HOM05D000104 ORTHO05D008568 4.3e-07 60.5 95 34.7
HanXRQChr10g0280821 Helianthus annuus HOM05D000104 ORTHO05D008568 4.3e-07 60.5 93 32.3
Lsat_1_v5_gn_9_10521 Lactuca sativa HOM05D000104 ORTHO05D008568 4.3e-07 60.5 96 35.4
PGR044G2555 Punica granatum HOM05D000104 ORTHO05D008568 4.3e-07 60.5 98 34.7
AT2G18760 Arabidopsis thaliana HOM05D000104 ORTHO05D008568 5.6e-07 60.1 118 35.6
Cc01_g18180 Coffea canephora HOM05D000104 ORTHO05D008568 5.6e-07 60.1 91 37.4
ECA247G0422 Erigeron canadensis HOM05D000104 ORTHO05D008568 5.6e-07 60.1 93 31.2
Aa31LG2G21880 Aethionema arabicum HOM05D000104 ORTHO05D008568 7.3e-07 59.7 167 31.7
Mapoly0209s0008 Marchantia polymorpha HOM05D000104 ORTHO05D006071 7.3e-07 59.7 190 27.9
CBR_g39569 Chara braunii HOM05D000104 ORTHO05D008568 9.5e-07 59.3 38 60.5
Migut.N02212 Erythranthe guttata HOM05D000104 ORTHO05D008568 9.5e-07 59.3 88 35.2
PSO210G7140 Papaver somniferum HOM05D000104 ORTHO05D008568 9.5e-07 59.3 123 32.5
Thecc.01G255700 Theobroma cacao HOM05D000104 ORTHO05D008568 9.5e-07 59.3 95 33.7
Atru.chr5.1731 Acer truncatum HOM05D000104 ORTHO05D008568 1.2e-06 58.9 138 29.7
MCO07G731 Micromonas commoda HOM05D000104 ORTHO05D006071 1.2e-06 58.9 48 54.2
THA.LOC104804044 Tarenaya hassleriana HOM05D000104 ORTHO05D008568 1.2e-06 58.9 128 32.0
Dinv34639 Davidia involucrata HOM05D000104 ORTHO05D008568 1.6e-06 58.5 95 36.8
MD05G1194600 Malus domestica HOM05D000104 ORTHO05D008568 1.6e-06 58.5 87 34.5
Sabra05G0174900 Salix brachista HOM05D000104 ORTHO05D008568 1.6e-06 58.5 95 38.9
Ah.02g112060 Amaranthus hybridus HOM05D000104 ORTHO05D008568 2.1e-06 58.2 115 35.7
Nn1g06879 Nelumbo nucifera HOM05D000104 ORTHO05D008568 2.1e-06 58.2 125 31.2
Aqoxy2G03678 Aquilegia oxysepala HOM05D000104 ORTHO05D008568 2.8e-06 57.8 95 34.7
Gohir.D08G209100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 2.8e-06 57.8 95 34.7
Gorai.004G221400 Gossypium raimondii HOM05D000104 ORTHO05D008568 2.8e-06 57.8 95 34.7
Mapoly0036s0084 Marchantia polymorpha HOM05D000104 ORTHO05D008568 2.8e-06 57.8 85 32.9
Phvul.007G191600 Phaseolus vulgaris HOM05D000104 ORTHO05D008568 2.8e-06 57.8 93 30.1
TPR.G5864 Trifolium pratense HOM05D000104 ORTHO05D008568 2.8e-06 57.8 125 32.0
VMungo0720G2644 Vigna mungo HOM05D000104 ORTHO05D008568 2.8e-06 57.8 98 35.7
AL3G53180 Arabidopsis lyrata HOM05D000104 ORTHO05D008568 3.6e-06 57.4 76 40.8
CDE04G2235 Ceratophyllum demersum HOM05D000104 ORTHO05D008568 3.6e-06 57.4 99 34.3
Sopen09g028210 Solanum pennellii HOM05D000104 ORTHO05D008568 3.6e-06 57.4 145 26.9
CARHR109360 Cardamine hirsuta HOM05D000104 ORTHO05D008568 4.7e-06 57.0 121 32.2
Cre03.g183350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006071 4.7e-06 57.0 40 60.0
GSVIVG01028359001 Vitis vinifera HOM05D000104 ORTHO05D008568 4.7e-06 57.0 99 33.3
CANSAT01G0880 Cannabis sativa HOM05D000104 ORTHO05D008568 6.2e-06 56.6 38 57.9
Cfa002445 Carpinus fangiana HOM05D000104 ORTHO05D008568 6.2e-06 56.6 97 35.1
Gohir.A08G191100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 6.2e-06 56.6 95 33.7
Lj1C69T5 Lonicera japonica HOM05D000104 ORTHO05D008568 6.2e-06 56.6 101 35.6
Medtr1g069755 Medicago truncatula HOM05D000104 ORTHO05D008568 6.2e-06 56.6 92 35.9
Psat6g061320 Pisum sativum HOM05D000104 ORTHO05D008568 6.2e-06 56.6 132 25.8
Sc24g0003180 Simmondsia chinensis HOM05D000104 ORTHO05D008568 6.2e-06 56.6 122 32.0
CSS0013286 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008568 8.1e-06 56.2 100 34.0
Lj5g0019569 Lotus japonicus HOM05D000104 ORTHO05D008568 8.1e-06 56.2 97 30.9
Manes.13G035800 Manihot esculenta HOM05D000104 ORTHO05D008568 8.1e-06 56.2 100 32.0
Prupe.8G221300 Prunus persica HOM05D000104 ORTHO05D008568 8.1e-06 56.2 72 34.7
PGSC0003DMG400010292 Solanum tuberosum HOM05D000104 ORTHO05D008568 8.1e-06 56.2 145 26.2
unitig_46.g18342 Utricularia gibba HOM05D000104 ORTHO05D008568 8.1e-06 56.2 99 29.3


User provided reference genes

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