Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.8e-124 447.6 228 100.0
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.9e-93 344.4 225 80.4
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.4e-91 337.4 212 84.4
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-90 336.7 212 84.4
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-87 326.6 225 76.4
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 3.2e-82 308.9 225 72.9
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 7.1e-82 307.8 225 70.7
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 1.0e-80 303.9 225 70.7
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 3.0e-80 302.4 225 70.2
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-79 299.7 253 67.6
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 7.4e-79 297.7 204 74.5
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 2.2e-78 296.2 225 69.8
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.2e-78 296.2 225 69.3
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 2.8e-78 295.8 225 68.4
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 6.3e-78 294.7 225 70.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 6.3e-78 294.7 225 68.0
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.8e-77 293.1 204 73.5
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 3.1e-77 292.4 225 68.9
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 3.1e-77 292.4 203 74.4
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 3.1e-77 292.4 225 68.0
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 4.1e-77 292.0 204 71.6
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 6.9e-77 291.2 224 69.6
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 9.0e-77 290.8 219 68.0
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.5e-76 290.0 214 68.7
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 2.0e-76 289.7 225 67.6
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 3.4e-76 288.9 225 65.8
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 3.4e-76 288.9 225 68.0
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 4.5e-76 288.5 225 66.7
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 4.5e-76 288.5 204 71.1
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 4.5e-76 288.5 203 71.9
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 4.5e-76 288.5 225 67.1
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 1.3e-75 287.0 230 68.3
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 1.3e-75 287.0 225 67.1
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 1.3e-75 287.0 225 67.1
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 1.3e-75 287.0 225 67.6
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 2.9e-75 285.8 225 67.6
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.9e-75 285.8 204 70.1
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 3.8e-75 285.4 225 66.7
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 5.0e-75 285.0 225 65.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 1.4e-74 283.5 225 66.7
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.2e-74 282.3 201 74.6
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 4.2e-74 282.0 235 64.7
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 5.5e-74 281.6 235 64.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 7.2e-74 281.2 227 67.8
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 7.2e-74 281.2 225 65.3
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 1.2e-73 280.4 219 68.5
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.6e-73 280.0 225 68.9
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 2.7e-73 279.3 225 68.9
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 3.6e-73 278.9 225 65.3
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 3.6e-73 278.9 225 65.3
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 6.1e-73 278.1 225 64.4
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 7.9e-73 277.7 225 64.9
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 7.9e-73 277.7 225 64.9
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.4e-72 276.9 225 68.4
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.8e-72 276.6 225 68.4
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 3.0e-72 275.8 225 64.4
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 3.0e-72 275.8 203 70.0
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 5.1e-72 275.0 200 70.0
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 5.1e-72 275.0 188 75.0
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 5.1e-72 275.0 207 72.5
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 6.7e-72 274.6 234 61.1
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 6.7e-72 274.6 225 64.4
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 8.8e-72 274.2 225 62.7
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 1.1e-71 273.9 223 64.6
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.1e-71 273.9 219 67.1
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.5e-71 273.5 225 64.9
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 2.0e-71 273.1 230 66.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 2.0e-71 273.1 230 63.9
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 3.3e-71 272.3 225 64.0
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 3.3e-71 272.3 225 64.0
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 4.3e-71 271.9 226 66.4
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 4.3e-71 271.9 225 65.3
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 5.7e-71 271.6 219 66.7
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 1.7e-70 270.0 223 64.6
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 1.7e-70 270.0 223 64.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 1.7e-70 270.0 223 64.6
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 1.7e-70 270.0 199 70.9
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 1.7e-70 270.0 225 64.0
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 2.2e-70 269.6 225 64.0
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 2.2e-70 269.6 223 64.6
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 2.8e-70 269.2 219 65.3
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 3.7e-70 268.9 225 64.9
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 6.3e-70 268.1 223 64.1
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 8.2e-70 267.7 223 63.7
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 1.8e-69 266.5 225 64.4
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 3.1e-69 265.8 225 63.1
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 6.9e-69 264.6 205 69.3
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 6.9e-69 264.6 221 64.7
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 1.2e-68 263.8 225 64.0
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 3.2e-66 255.8 236 60.2
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 5.5e-66 255.0 232 59.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 1.6e-65 253.4 236 58.9
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 1.6e-65 253.4 226 61.1
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.1e-65 253.1 225 60.9
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 2.7e-65 252.7 226 61.1
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.0e-64 250.8 225 60.9
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 1.4e-64 250.4 225 60.0
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 9.7e-63 244.2 226 59.3
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 2.2e-59 233.0 226 58.4
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 5.5e-58 228.4 189 64.6
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.1e-55 220.7 226 54.4
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.6e-52 210.3 222 50.9
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.0e-51 207.6 225 53.3
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 1.5e-50 203.8 203 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 2.7e-49 199.5 204 51.0
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.7e-49 199.5 194 59.3
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 5.2e-48 195.3 207 49.8
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.0e-43 181.0 228 46.9
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 4.2e-42 175.6 207 48.3
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.1e-37 161.0 143 62.9
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 2.0e-36 156.8 223 43.5
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.5e-34 150.6 121 66.1
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.0e-20 103.6 78 69.2
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 6.0e-20 102.1 98 61.2
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.4e-13 80.9 174 35.1
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.5e-10 70.9 46 67.4


User provided reference genes

Program Settings