Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032060 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 0.0e+00 1473.4 724 100.0
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.4e-232 809.3 767 59.2
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 8.0e-212 741.1 778 55.1
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.3e-201 707.2 697 59.1
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 4.6e-199 698.7 772 53.2
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 3.1e-179 632.9 845 47.0
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 5.4e-176 622.1 842 46.9
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 7.7e-138 495.4 847 39.7
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 1.4e-134 484.6 736 42.4
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 3.6e-127 459.9 695 44.5
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 6.7e-126 455.7 687 41.9
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.7e-124 449.9 733 41.2
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 5.5e-120 436.0 674 40.7
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 1.6e-119 434.5 675 41.3
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 8.0e-119 432.2 732 40.3
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 1.0e-118 431.8 680 40.9
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 1.4e-115 421.4 688 40.4
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 1.8e-115 421.0 680 40.4
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 2.9e-113 413.7 703 39.1
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 1.1e-112 411.8 785 38.1
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 8.0e-111 405.6 680 39.6
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.2e-109 401.7 609 41.7
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 2.6e-109 400.6 675 39.7
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 7.5e-109 399.1 795 36.6
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 9.8e-109 398.7 674 39.9
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 2.8e-108 397.1 684 39.2
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 5.4e-107 392.9 726 37.2
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 8.6e-105 385.6 768 37.2
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 8.6e-105 385.6 686 37.2
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.5e-104 384.8 677 37.4
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 9.5e-104 382.1 700 37.0
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 9.5e-104 382.1 672 38.4
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 6.1e-103 379.4 813 34.8
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 1.2e-101 375.2 733 35.6
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 1.5e-101 374.8 732 35.4
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 1.5e-101 374.8 736 37.2
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 4.4e-101 373.2 841 34.1
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 7.5e-101 372.5 733 35.6
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 9.2e-99 365.5 847 34.0
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 5.9e-98 362.8 718 37.6
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 7.8e-98 362.5 859 33.1
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.0e-97 362.1 848 32.5
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 8.6e-97 359.0 852 32.5
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 8.6e-97 359.0 791 34.5
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 3.3e-96 357.1 854 32.3
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 1.0e-94 352.1 854 31.7
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 2.3e-94 350.9 690 35.8
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 1.2e-93 348.6 817 34.0
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 3.7e-92 343.6 715 34.1
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 4.9e-92 343.2 823 32.3
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 1.1e-91 342.0 666 35.0
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 2.4e-91 340.9 845 32.0
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 3.2e-91 340.5 825 33.0
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.6e-90 338.2 406 51.7
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 3.5e-90 337.0 692 35.7
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 6.0e-90 336.3 682 34.3
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 2.3e-89 334.3 750 34.3
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 2.3e-89 334.3 854 31.5
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 2.3e-89 334.3 732 33.9
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 3.0e-89 334.0 724 33.6
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 5.0e-89 333.2 734 34.1
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 6.6e-89 332.8 733 34.0
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 1.5e-88 331.6 717 34.9
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 1.5e-88 331.6 855 32.0
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 1.5e-88 331.6 727 34.8
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 5.6e-88 329.7 734 33.9
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.6e-87 327.0 734 34.2
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 1.1e-86 325.5 692 35.3
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 1.4e-86 325.1 843 32.4
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 1.4e-86 325.1 674 33.5
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 2.3e-86 324.3 820 31.2
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.1e-86 323.9 856 31.5
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 5.2e-86 323.2 674 33.2
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 8.9e-86 322.4 722 34.2
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 1.2e-85 322.0 711 34.6
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 2.6e-85 320.9 824 33.1
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 7.5e-85 319.3 727 33.3
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 9.8e-85 318.9 800 31.8
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 2.9e-84 317.4 704 33.8
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 4.9e-84 316.6 719 33.2
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 4.9e-84 316.6 737 33.0
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 1.9e-83 314.7 723 33.5
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 3.2e-83 313.9 727 33.3
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 4.1e-83 313.5 837 32.0
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 2.1e-82 311.2 824 31.9
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 4.6e-82 310.1 879 30.1
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 7.8e-82 309.3 760 31.4
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 3.0e-81 307.4 721 33.0
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 3.9e-81 307.0 879 29.8
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 6.6e-81 306.2 720 32.4
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 1.9e-80 304.7 654 32.9
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.6e-79 301.6 646 35.4
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 1.1e-78 298.9 625 33.8
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 8.9e-78 295.8 712 32.3
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 4.4e-77 293.5 661 33.6
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 5.8e-77 293.1 712 31.7
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 2.9e-76 290.8 810 32.3
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 2.9e-76 290.8 698 32.8
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 8.4e-76 289.3 811 31.3
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 6.0e-74 283.1 723 32.5
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 3.0e-73 280.8 721 32.2
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 1.1e-72 278.9 714 32.9
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.5e-72 278.5 670 32.8
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 3.3e-72 277.3 717 32.5
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 4.3e-72 276.9 800 31.0
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 9.6e-72 275.8 721 32.0
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 9.6e-72 275.8 716 32.1
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 1.2e-71 275.4 713 32.4
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 1.6e-71 275.0 721 32.2
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 2.1e-71 274.6 717 32.4
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 1.1e-70 272.3 722 31.6
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 7.6e-69 266.2 720 31.1
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 1.1e-67 262.3 720 31.0
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 1.6e-66 258.5 568 33.5
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 2.7e-66 257.7 704 31.7
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 1.1e-62 245.7 596 32.7
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 1.1e-62 245.7 596 32.7
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 1.8e-62 245.0 627 32.2
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 2.6e-61 241.1 760 28.7
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.7e-60 238.4 488 34.4
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 3.8e-60 237.3 618 32.0
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.6e-58 231.9 320 44.4
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 1.8e-57 228.4 322 43.5
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 2.2e-52 211.5 462 31.8
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 8.4e-52 209.5 322 39.1
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 1.8e-46 191.8 572 28.8
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 3.9e-33 147.5 215 39.1
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 8.7e-33 146.4 209 44.5
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 5.7e-32 143.7 506 28.1
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 1.5e-29 135.6 495 28.3
HanXRQChr09g0266041 Helianthus annuus HOM05D003353 ORTHO05D003751 1.3e-20 105.9 219 32.4
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.4e-19 102.4 210 31.4
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 1.0e-17 96.3 128 44.5
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 1.4e-17 95.9 232 30.2
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 4.4e-16 90.9 623 22.8
Lsat_1_v5_gn_4_181221 Lactuca sativa HOM05D003353 ORTHO05D003751 2.2e-12 78.6 160 35.6
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.9e-12 78.2 332 24.7
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.9e-12 78.2 341 25.2
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 7.2e-11 73.6 145 31.7
Carub.0001s0467 Capsella rubella HOM05D003353 ORTHO05D003751 3.6e-10 71.2 127 34.6
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.0e-09 69.7 123 33.3
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.8e-07 61.6 184 28.8
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.1e-06 59.7 161 32.3


User provided reference genes

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