Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1427.5 743 100.0
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1402.9 749 96.5
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1216.8 755 80.1
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1212.2 747 82.2
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1188.7 690 83.2
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1182.2 706 81.7
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1136.7 621 85.7
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1127.1 621 84.9
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1125.9 620 84.5
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1121.7 625 85.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1120.1 621 84.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1119.4 621 84.4
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1117.1 621 83.7
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1116.7 756 73.1
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1115.9 621 83.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1115.5 621 83.9
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1114.0 617 85.3
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 0.0e+00 1114.0 621 83.6
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1112.1 750 74.1
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1106.3 620 84.0
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1103.6 621 83.7
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1099.7 696 77.0
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1090.5 629 81.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 0.0e+00 1090.1 618 82.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 0.0e+00 1089.7 623 83.5
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 0.0e+00 1089.7 618 83.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 0.0e+00 1085.9 621 80.5
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 0.0e+00 1081.2 616 82.8
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 0.0e+00 1080.9 746 71.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 0.0e+00 1079.3 621 81.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 621 80.5
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 3.6e-311 1071.2 627 81.3
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.1e-311 1070.5 742 75.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.9e-310 1068.1 676 77.7
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.9e-310 1067.8 621 80.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 3.3e-309 1064.7 620 80.6
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 5.6e-309 1063.9 622 79.4
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 3.6e-308 1061.2 734 72.1
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 8.0e-308 1060.1 707 74.0
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.8e-307 1058.9 617 81.5
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 6.8e-307 1057.0 633 79.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.7e-305 1052.4 742 69.3
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 2.2e-305 1052.0 621 78.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.1e-304 1049.7 724 70.7
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.6e-303 1045.8 621 78.4
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 5.0e-302 1040.8 622 80.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 5.0e-302 1040.8 620 77.6
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 6.6e-302 1040.4 739 70.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 3.1e-299 1031.6 620 77.6
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.4e-298 1028.1 620 76.6
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 7.5e-298 1026.9 757 67.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 7.5e-298 1026.9 622 78.8
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 7.8e-295 1016.9 626 75.1
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 5.0e-294 1014.2 620 76.0
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 8.6e-294 1013.4 704 71.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 5.6e-293 1010.7 621 76.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 9.5e-293 1010.0 663 71.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.2e-292 1009.6 621 76.5
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.3e-291 1005.4 565 83.5
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 6.8e-291 1003.8 651 74.2
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 7.5e-290 1000.3 787 68.0
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 8.3e-289 996.9 624 74.8
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.6e-287 992.6 620 74.4
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-287 992.3 623 74.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-287 992.3 623 74.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 2.1e-287 992.3 623 74.2
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 4.6e-287 991.1 619 74.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.3e-286 989.6 665 75.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 7.3e-285 983.8 716 70.8
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.2e-284 983.0 540 84.6
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.0e-282 975.7 623 73.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 3.4e-282 974.9 623 73.0
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 4.4e-282 974.5 738 66.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 7.6e-282 973.8 623 73.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.3e-281 973.0 572 81.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 5.4e-280 967.6 618 73.1
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.4e-280 967.6 723 71.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 5.4e-280 967.6 671 69.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.2e-279 966.5 751 66.0
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.2e-279 966.5 626 75.2
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 2.1e-279 965.7 622 71.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 6.0e-279 964.1 705 67.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.7e-278 962.6 620 75.6
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 3.0e-278 961.8 741 64.4
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.0e-278 961.8 705 67.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 7.3e-277 957.2 741 64.4
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 9.6e-277 956.8 624 75.0
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.6e-276 956.1 624 73.4
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 2.1e-276 955.7 620 73.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.8e-276 955.3 620 73.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.1e-275 953.4 738 65.9
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 3.1e-275 951.8 705 67.7
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.6e-271 939.5 619 68.8
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 8.7e-270 933.7 639 69.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 5.6e-269 931.0 592 76.9
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 3.1e-267 925.2 623 70.0
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.4e-264 914.4 710 63.8
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.4e-259 899.0 622 69.8
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.2e-255 886.7 751 61.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.3e-254 883.2 611 69.6
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.9e-251 870.9 753 60.3
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-250 870.2 702 63.1
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.8e-244 848.2 622 63.2
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.3e-241 840.1 621 64.9
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 8.5e-241 837.4 710 61.8
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-240 836.6 623 66.6
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.4e-235 820.1 642 60.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.5e-233 811.2 757 58.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 6.5e-233 811.2 621 60.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.5e-232 809.3 532 74.8
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.4e-227 793.5 646 58.8
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.0e-225 787.3 554 67.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.0e-225 787.3 621 59.9
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 5.5e-224 781.6 661 62.3
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.4e-211 739.6 764 54.2
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 2.4e-211 739.6 568 67.3
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 4.7e-207 725.3 537 63.5
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.6e-202 710.3 428 78.3
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.7e-202 709.5 428 79.0
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.0e-201 707.6 622 58.5
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.3e-198 696.4 621 57.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.8e-193 679.1 513 67.4
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.2e-191 674.1 463 73.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-189 667.2 429 73.9
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 2.2e-188 663.3 433 71.8
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.2e-183 645.2 423 70.7
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-181 640.2 423 70.2
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.8e-181 638.6 427 70.7
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.3e-180 637.5 428 70.1
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.1e-174 617.8 654 48.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.0e-161 574.7 711 42.9
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 2.4e-147 526.9 634 42.4
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.4e-147 526.9 427 61.1
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 3.4e-141 506.5 659 41.6
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 9.9e-141 505.0 428 59.1
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 2.9e-132 476.9 621 41.2
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.4e-125 453.4 319 65.2
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.6e-114 417.9 434 50.2
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 6.1e-106 389.4 226 80.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 3.8e-100 370.2 189 89.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.5e-96 358.2 192 83.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.2e-95 354.4 183 89.1
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.3e-89 334.3 169 89.9
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 5.5e-83 313.2 197 72.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.8e-81 306.2 185 74.6
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.4e-80 303.9 185 73.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 5.6e-75 286.6 185 71.9
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 3.6e-74 283.9 156 80.1
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 6.6e-68 263.1 136 85.3
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.3e-67 260.4 169 71.6
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 4.4e-56 223.8 151 68.2
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.7e-52 211.8 265 48.3
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-51 208.8 103 88.3
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.9e-43 181.8 113 75.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.6e-42 178.7 84 94.0
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 5.8e-40 170.2 111 71.2
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.7e-37 161.4 100 77.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 4.9e-31 140.6 79 78.5
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.3e-28 131.7 115 52.2
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.8e-26 124.8 75 74.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.4e-25 122.5 148 48.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 3.1e-25 121.3 72 76.4
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 9.0e-25 119.8 72 72.2
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 4.9e-23 114.0 85 62.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.4e-15 86.7 50 74.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 5.5e-14 84.0 51 76.5
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.9e-11 75.5 44 79.5
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 3.3e-11 74.7 44 75.0
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.7e-07 62.4 293 25.9
CANSAT11G0752 Cannabis sativa HOM05D005961 ORTHO05D007391 2.2e-07 62.0 307 23.8
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 5.0e-07 60.8 222 24.3
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 2.5e-06 58.5 285 22.1
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 2.5e-06 58.5 228 24.1
Sp6g17980 Schrenkiella parvula HOM05D005961 ORTHO05D007391 4.2e-06 57.8 165 27.3
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 7.2e-06 57.0 62 51.6


User provided reference genes

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