Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.6e-147 524.2 264 100.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.1e-139 500.0 273 93.8
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.1e-134 483.4 273 87.9
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.9e-134 482.6 273 88.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.5e-134 481.1 273 87.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.1e-132 474.6 273 87.2
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.1e-132 474.6 273 87.2
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.7e-132 473.8 273 86.8
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 8.7e-132 473.8 273 86.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.1e-131 473.4 276 86.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.1e-131 473.4 273 86.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 1.5e-131 473.0 273 86.1
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 2.5e-131 472.2 273 86.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 4.3e-131 471.5 273 86.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 5.7e-131 471.1 273 85.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 2.8e-130 468.8 273 85.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 3.7e-130 468.4 270 85.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 3.7e-130 468.4 270 85.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 3.7e-130 468.4 270 85.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 6.2e-130 467.6 273 85.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 8.2e-130 467.2 273 85.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 8.2e-130 467.2 273 84.6
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.4e-129 466.5 273 83.9
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.8e-129 466.1 273 84.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 3.1e-129 465.3 273 83.9
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 6.9e-129 464.2 273 85.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.2e-128 463.4 273 85.7
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 1.5e-128 463.0 273 84.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-128 463.0 273 83.5
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 1.5e-128 463.0 273 84.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 1.5e-128 463.0 273 85.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 2.0e-128 462.6 270 85.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 2.0e-128 462.6 273 85.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 2.6e-128 462.2 273 84.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 3.4e-128 461.8 273 83.5
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 4.5e-128 461.5 273 83.9
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 5.8e-128 461.1 273 84.2
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 5.8e-128 461.1 273 83.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 7.6e-128 460.7 273 83.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-127 459.9 273 83.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 2.2e-127 459.1 270 83.3
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 2.9e-127 458.8 273 84.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 3.8e-127 458.4 273 82.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.0e-127 458.0 270 84.4
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 5.0e-127 458.0 273 83.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 8.4e-127 457.2 273 82.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 1.4e-126 456.4 270 83.7
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.4e-126 456.4 273 83.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.9e-126 456.1 273 83.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 3.2e-126 455.3 273 83.2
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.2e-126 454.9 262 86.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 7.2e-126 454.1 273 83.2
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 9.3e-126 453.8 273 81.7
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 9.3e-126 453.8 299 76.3
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 1.2e-125 453.4 273 83.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.6e-125 453.0 273 82.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.6e-125 453.0 271 82.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.6e-125 453.0 270 83.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.6e-125 453.0 274 81.8
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.6e-125 453.0 273 81.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 2.1e-125 452.6 273 82.4
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 2.1e-125 452.6 273 82.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 2.7e-125 452.2 273 82.4
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.7e-125 452.2 270 82.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.7e-125 452.2 272 80.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.6e-125 451.4 271 82.3
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 4.6e-125 451.4 273 83.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 7.9e-125 450.7 273 82.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.0e-124 450.3 273 83.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 1.0e-124 450.3 272 83.8
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.3e-124 449.9 269 82.5
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.8e-124 449.5 272 80.5
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.8e-124 449.5 273 82.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 3.0e-124 448.7 270 80.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.9e-124 448.4 269 82.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 3.9e-124 448.4 270 80.4
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 6.7e-124 447.6 270 80.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 6.7e-124 447.6 270 80.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 6.7e-124 447.6 270 80.4
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 6.7e-124 447.6 270 80.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 6.7e-124 447.6 272 80.5
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.5e-123 445.7 270 80.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.5e-123 445.7 270 80.0
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 2.5e-123 445.7 270 80.4
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.3e-123 445.3 270 81.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.3e-122 443.4 270 80.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 8.2e-122 440.7 259 84.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.8e-121 439.5 273 78.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 3.1e-121 438.7 270 79.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 4.1e-121 438.3 270 80.4
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 7.7e-120 434.1 272 79.0
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.0e-119 433.7 270 78.5
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.0e-119 433.7 270 78.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 5.0e-119 431.4 270 78.1
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 5.0e-119 431.4 254 85.0
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.5e-119 431.0 261 82.8
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.5e-119 431.0 269 78.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 4.2e-118 428.3 252 84.5
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.5e-118 427.9 272 78.3
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 2.7e-117 425.6 271 78.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 3.6e-117 425.2 270 77.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.9e-116 421.8 255 82.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 5.1e-116 421.4 270 76.3
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 5.1e-116 421.4 244 84.4
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.0e-115 419.5 275 76.0
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.3e-115 418.3 252 82.5
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.8e-114 415.6 296 68.2
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.7e-114 415.2 270 75.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.5e-112 409.8 244 82.0
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 7.7e-112 407.5 294 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.7e-111 406.4 274 72.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.7e-111 406.4 274 72.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 2.9e-111 405.6 273 76.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.4e-108 396.7 274 71.5
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.4e-107 391.7 271 71.2
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.7e-107 390.6 237 84.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 5.3e-105 384.8 272 71.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-99 367.1 221 81.4
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.4e-91 339.0 243 72.4
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.1e-85 319.7 269 58.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.6e-83 312.8 194 77.8
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.4e-81 306.2 269 54.6
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.8e-77 292.7 179 79.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.7e-71 273.5 215 67.0
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.3e-70 268.9 183 74.9
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.6e-70 268.5 149 83.9
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 5.8e-59 231.9 156 75.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.4e-57 227.3 298 45.3
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.5e-56 222.6 167 72.5
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 5.4e-49 198.7 124 67.7
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 6.6e-39 165.2 79 92.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.8e-37 159.1 91 86.8
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 7.6e-35 151.8 351 29.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.1e-29 131.7 65 89.2
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.5e-27 127.5 296 30.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.6e-27 125.2 81 76.5
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.9e-23 112.8 61 80.3
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 5.6e-22 109.0 69 75.4
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.3e-20 102.4 93 62.4
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-12 76.3 78 50.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.9e-11 72.4 64 64.1
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.9e-09 67.4 166 27.7


User provided reference genes

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