Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 3.0e-154 548.5 280 100.0
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 3.1e-119 432.2 287 80.8
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 7.7e-86 321.2 288 62.8
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 5.0e-85 318.5 282 62.8
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 1.4e-84 317.0 285 62.8
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 6.7e-82 308.1 286 61.2
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 6.7e-82 308.1 286 60.1
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 3.7e-80 302.4 286 60.5
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 8.2e-80 301.2 286 59.1
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 1.1e-79 300.8 334 56.0
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 2.4e-79 299.7 276 61.6
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 4.5e-78 295.4 286 58.4
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 7.2e-76 288.1 276 59.1
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.6e-75 287.0 283 57.6
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 1.0e-74 284.3 294 56.1
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 1.5e-73 280.4 286 57.0
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 1.5e-73 280.4 286 57.0
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 2.6e-73 279.6 285 57.2
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 1.3e-72 277.3 285 56.8
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 1.7e-72 276.9 281 54.8
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 2.2e-72 276.6 284 54.2
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 2.2e-72 276.6 287 54.4
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 2.2e-72 276.6 283 55.8
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 2.2e-72 276.6 283 55.8
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 6.3e-72 275.0 284 54.2
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 6.3e-72 275.0 288 56.6
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 8.2e-72 274.6 284 54.9
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 8.2e-72 274.6 284 54.9
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 1.1e-71 274.2 283 55.5
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 1.8e-71 273.5 314 51.3
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 3.1e-71 272.7 285 56.8
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 9.1e-71 271.2 284 56.3
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 1.2e-70 270.8 284 53.5
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.2e-70 270.8 261 58.6
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 1.2e-70 270.8 281 53.0
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 1.6e-70 270.4 281 53.0
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 2.0e-70 270.0 289 52.6
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 2.6e-70 269.6 275 54.9
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 2.6e-70 269.6 284 53.9
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 2.6e-70 269.6 289 54.7
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 3.5e-70 269.2 286 53.8
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 4.5e-70 268.9 297 54.2
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 1.3e-69 267.3 255 58.4
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 1.3e-69 267.3 289 54.7
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 1.7e-69 266.9 289 52.2
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 2.2e-69 266.5 281 52.3
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 2.2e-69 266.5 282 54.3
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 5.0e-69 265.4 284 53.9
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 1.1e-68 264.2 271 57.2
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 1.9e-68 263.5 288 53.8
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 7.2e-68 261.5 283 55.5
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 9.4e-68 261.2 262 56.9
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 1.2e-67 260.8 286 52.4
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 2.1e-67 260.0 268 54.9
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 2.1e-67 260.0 289 53.3
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 3.6e-67 259.2 262 54.6
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 6.1e-67 258.5 268 54.5
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 6.1e-67 258.5 288 52.1
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 8.0e-67 258.1 283 53.0
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 2.3e-66 256.5 285 51.9
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 4.0e-66 255.8 287 53.3
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 5.2e-66 255.4 292 53.8
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 6.8e-66 255.0 288 52.4
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 6.8e-66 255.0 304 49.0
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 2.8e-64 249.6 275 53.8
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 3.7e-64 249.2 258 54.7
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 6.3e-64 248.4 287 50.9
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 6.3e-64 248.4 285 54.7
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 1.1e-63 247.7 286 51.0
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 3.8e-61 239.2 285 49.1
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 5.0e-61 238.8 286 50.0
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 6.5e-61 238.4 285 50.2
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 6.5e-61 238.4 286 50.7
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 6.5e-61 238.4 378 41.5
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 2.5e-60 236.5 287 48.1
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 5.5e-60 235.3 283 51.2
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 1.2e-59 234.2 286 49.7
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 2.1e-59 233.4 285 48.1
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 2.7e-59 233.0 265 50.2
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 1.0e-58 231.1 282 47.9
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 1.5e-57 227.3 260 50.0
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 3.4e-57 226.1 285 48.8
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 8.3e-56 221.5 285 47.4
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 1.8e-55 220.3 253 49.8
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 2.4e-55 219.9 282 48.2
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 9.1e-55 218.0 282 47.9
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 1.6e-54 217.2 455 36.7
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 2.0e-54 216.9 287 46.7
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 2.7e-54 216.5 282 48.6
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 2.9e-53 213.0 226 55.8
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 5.5e-52 208.8 284 47.2
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 1.2e-51 207.6 287 47.0
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 1.2e-51 207.6 227 50.2
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 1.2e-51 207.6 227 50.2
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 5.2e-50 202.2 290 43.1
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 5.7e-49 198.7 285 45.3
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 1.4e-47 194.1 279 44.1
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 1.6e-46 190.7 207 49.8
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 3.5e-46 189.5 308 42.5
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 3.3e-36 156.4 134 57.5
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 6.2e-35 152.1 185 44.3
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 3.4e-33 146.4 119 72.3
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 2.7e-30 136.7 179 48.6
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 1.0e-29 134.8 263 33.1
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 1.2e-27 127.9 279 35.1
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 8.9e-26 121.7 125 51.2
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.4e-23 113.6 98 53.1
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 1.4e-18 97.8 110 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 1.2e-17 94.7 264 28.0
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 1.5e-17 94.4 98 49.0
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 1.9e-15 87.4 130 45.4
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 9.3e-15 85.1 123 48.8
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 1.1e-12 78.2 88 54.5
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 1.1e-12 78.2 140 38.6
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 3.3e-12 76.6 206 29.1
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 3.3e-12 76.6 261 24.5
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 1.6e-11 74.3 265 26.8
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 8.1e-11 72.0 93 43.0
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 4.4e-09 66.2 82 47.6
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 1.6e-06 57.8 49 55.1
unitig_747.g21677 Utricularia gibba HOM05D006635 ORTHO05D008047 2.7e-06 57.0 50 54.0


User provided reference genes

Program Settings