Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031316 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D015222 2.0e-89 332.4 169 100.0
CSS0047652 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D015222 4.8e-67 258.1 180 80.0
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 4.8e-43 178.3 152 69.1
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 1.2e-38 163.7 152 65.8
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 8.0e-38 161.0 150 61.3
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 8.9e-37 157.5 150 60.7
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.2e-36 157.1 119 73.9
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 5.7e-36 154.8 145 64.1
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.1e-34 150.6 148 59.5
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.4e-34 149.4 150 58.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.1e-34 149.1 147 59.9
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 4.1e-34 148.7 151 57.0
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 5.4e-34 148.3 150 58.7
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 5.4e-34 148.3 152 55.3
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 3.9e-32 142.1 150 56.7
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 5.0e-32 141.7 150 57.3
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 5.0e-32 141.7 150 56.0
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 6.6e-32 141.4 150 57.3
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 6.6e-32 141.4 150 56.7
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 6.6e-32 141.4 152 57.2
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 6.6e-32 141.4 147 56.5
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 8.6e-32 141.0 163 52.8
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.1e-31 140.6 150 56.0
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.1e-31 140.6 152 52.6
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 1.9e-31 139.8 150 56.7
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 2.5e-31 139.4 150 55.3
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 3.3e-31 139.0 152 53.3
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 3.3e-31 139.0 152 55.9
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 4.3e-31 138.7 150 54.7
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.3e-31 138.7 141 57.4
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 7.3e-31 137.9 152 53.9
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 9.5e-31 137.5 151 55.0
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 9.5e-31 137.5 147 55.8
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.2e-30 137.1 148 57.4
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.2e-30 137.1 152 53.9
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.6e-30 136.7 151 52.3
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.6e-30 136.7 152 53.3
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.8e-30 136.0 150 57.3
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.8e-30 136.0 151 53.6
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.8e-30 136.0 150 55.3
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.6e-30 135.6 150 55.3
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 3.6e-30 135.6 150 56.7
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 3.6e-30 135.6 150 56.7
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 4.7e-30 135.2 151 57.0
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.0e-29 134.0 152 52.6
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 1.0e-29 134.0 152 53.3
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-29 134.0 151 53.6
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-29 134.0 151 53.6
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 1.8e-29 133.3 147 54.4
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.3e-29 132.9 150 53.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.3e-29 132.9 151 53.0
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.3e-29 132.9 151 53.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 2.3e-29 132.9 150 53.3
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 3.1e-29 132.5 150 53.3
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 3.1e-29 132.5 138 54.3
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 6.8e-29 131.3 150 52.7
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 6.8e-29 131.3 151 55.6
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 6.8e-29 131.3 151 55.6
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 6.8e-29 131.3 150 54.0
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 6.8e-29 131.3 150 54.7
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 8.9e-29 131.0 152 52.0
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.9e-29 131.0 151 55.6
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.2e-28 130.6 149 49.0
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 1.2e-28 130.6 154 53.2
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.0e-28 129.8 151 54.3
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 2.6e-28 129.4 150 52.7
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.6e-28 129.4 151 54.3
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 3.4e-28 129.0 150 53.3
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 4.4e-28 128.6 151 52.3
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.4e-28 128.6 150 50.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 4.4e-28 128.6 150 52.7
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 5.8e-28 128.3 127 59.1
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 5.8e-28 128.3 151 55.0
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 5.8e-28 128.3 150 53.3
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 7.5e-28 127.9 145 53.8
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 9.8e-28 127.5 151 53.6
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.3e-27 127.1 138 54.3
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.7e-27 126.7 150 52.0
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 3.7e-27 125.6 145 51.7
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 3.7e-27 125.6 151 53.6
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 4.9e-27 125.2 147 51.0
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 6.4e-27 124.8 150 52.0
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 6.4e-27 124.8 150 53.3
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 6.4e-27 124.8 146 51.4
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 6.4e-27 124.8 156 50.6
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 8.3e-27 124.4 152 48.0
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.1e-26 124.0 151 51.7
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 3.2e-26 122.5 150 51.3
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 3.2e-26 122.5 152 50.0
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 7.0e-26 121.3 152 51.3
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 9.2e-26 120.9 150 51.3
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.2e-25 120.6 145 49.7
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.6e-25 120.2 150 52.7
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 2.0e-25 119.8 156 48.1
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 2.0e-25 119.8 156 48.1
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 2.0e-25 119.8 156 48.7
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.0e-25 119.8 149 50.3
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.5e-25 119.0 152 50.0
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.5e-25 119.0 150 50.7
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 3.5e-25 119.0 152 48.7
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 3.5e-25 119.0 155 47.1
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 4.6e-25 118.6 150 51.3
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 6.0e-25 118.2 127 54.3
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 7.8e-25 117.9 145 49.0
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 7.8e-25 117.9 177 46.9
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.0e-24 117.5 150 51.3
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.7e-24 116.7 150 48.7
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 3.0e-24 115.9 152 49.3
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 3.0e-24 115.9 154 47.4
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 3.9e-24 115.5 153 46.4
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 5.0e-24 115.2 155 47.1
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 5.0e-24 115.2 145 49.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 6.6e-24 114.8 145 48.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 8.6e-24 114.4 145 48.3
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 8.6e-24 114.4 145 48.3
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.1e-23 114.0 160 51.2
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 1.5e-23 113.6 127 52.8
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.5e-23 112.8 143 49.7
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 3.3e-23 112.5 156 46.2
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 3.3e-23 112.5 155 46.5
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.3e-23 112.5 141 49.6
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 5.6e-23 111.7 142 47.2
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 7.3e-23 111.3 123 52.0
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 9.5e-23 110.9 142 45.1
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.6e-22 110.2 123 50.4
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 2.1e-22 109.8 145 48.3
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 2.1e-22 109.8 142 45.1
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 4.7e-22 108.6 142 45.8
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.4e-21 107.1 145 46.2
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.8e-21 106.7 142 47.9
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 2.3e-21 106.3 145 46.2
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 2.3e-21 106.3 145 46.2
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 4.0e-21 105.5 145 46.2
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 4.0e-21 105.5 145 46.2
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 4.0e-21 105.5 145 46.2
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 4.0e-21 105.5 155 45.2
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 5.2e-21 105.1 146 41.1
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 6.8e-21 104.8 148 42.6
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 7.5e-20 101.3 125 48.8
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 9.8e-20 100.9 79 65.8
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.3e-19 100.5 152 40.1
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 7.0e-18 94.7 139 39.6
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.2e-17 94.0 152 36.2
MELO3C013604.2 Cucumis melo HOM05D001670 ORTHO05D015222 1.6e-17 93.6 78 65.4
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.6e-17 93.6 128 44.5
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 1.0e-16 90.9 178 37.6
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.9e-16 89.0 115 41.7
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.8e-13 80.1 93 46.2
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 6.8e-13 78.2 88 47.7
arahy.Tifrunner.gnm1.ann1.A8401K Arachis hypogaea HOM05D001670 ORTHO05D015222 5.8e-12 75.1 142 36.6
Psat0s3411g0160 Pisum sativum HOM05D001670 ORTHO05D015222 9.9e-12 74.3 118 45.8
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 9.9e-12 74.3 121 43.8
PSO782G0711 Papaver somniferum HOM05D001670 ORTHO05D015222 2.9e-11 72.8 153 34.6
BcaNung05010 Brassica carinata HOM05D001670 ORTHO05D010670 3.7e-11 72.4 124 42.7
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 7.1e-10 68.2 109 48.6
Lj5A710T19 Lonicera japonica HOM05D001670 ORTHO05D015222 2.1e-09 66.6 49 71.4


User provided reference genes

Program Settings