Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.3e-120 434.1 218 100.0
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.3e-109 399.1 218 93.6
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.6e-94 349.7 230 78.3
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 9.5e-92 340.5 231 78.4
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 8.9e-90 334.0 223 77.6
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 5.8e-89 331.3 230 75.2
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.4e-87 326.6 231 74.0
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.1e-83 312.8 231 69.3
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 2.8e-83 312.4 229 70.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.8e-81 304.7 229 68.1
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 7.6e-81 304.3 227 71.4
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.7e-80 303.1 231 69.7
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.8e-80 302.0 229 67.2
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 4.9e-80 301.6 231 68.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 4.9e-80 301.6 231 69.3
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 6.4e-80 301.2 231 67.1
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 8.4e-80 300.8 231 68.0
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.4e-79 300.1 231 66.2
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.4e-79 299.3 229 67.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.4e-79 299.3 229 66.8
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 3.2e-79 298.9 232 67.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 5.4e-79 298.1 232 67.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 7.1e-79 297.7 231 66.2
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 7.1e-79 297.7 232 67.2
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.1e-78 296.2 229 66.4
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.7e-78 295.8 231 68.0
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 4.6e-78 295.0 237 67.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.8e-78 294.3 226 66.8
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 7.8e-78 294.3 226 66.8
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.8e-78 294.3 234 67.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.3e-77 292.7 225 65.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 2.3e-77 292.7 218 69.3
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 2.3e-77 292.7 231 67.5
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-77 292.7 229 65.9
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.3e-77 292.7 233 67.4
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 5.1e-77 291.6 235 67.7
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 8.6e-77 290.8 227 67.4
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.3e-76 288.9 224 68.8
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-76 288.5 231 65.4
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.6e-76 288.1 227 68.7
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 7.3e-76 287.7 226 67.3
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-75 287.0 231 66.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.2e-75 287.0 233 67.4
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.8e-75 285.8 227 66.5
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 3.6e-75 285.4 218 66.1
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.7e-75 285.0 231 66.2
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 6.2e-75 284.6 219 67.1
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 6.2e-75 284.6 233 64.8
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 6.2e-75 284.6 233 66.5
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.1e-74 283.9 230 63.5
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.4e-74 282.7 223 65.5
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.4e-74 282.7 223 65.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 3.1e-74 282.3 234 66.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.9e-72 275.8 214 67.8
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.8e-72 275.4 228 63.6
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 6.4e-72 274.6 215 65.6
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 8.4e-72 274.2 226 63.7
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.4e-71 272.7 232 62.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 7.1e-71 271.2 231 62.8
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.2e-70 270.4 223 64.6
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.7e-70 269.2 231 62.8
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.0e-69 267.3 230 62.6
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.3e-69 266.9 229 63.3
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 3.0e-69 265.8 225 62.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.9e-69 265.4 205 66.8
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 5.1e-69 265.0 227 61.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.9e-68 263.1 204 66.7
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.9e-68 263.1 226 61.5
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.3e-68 261.9 228 59.2
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.6e-67 260.0 226 62.4
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 8.1e-67 257.7 217 63.6
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 3.1e-66 255.8 230 60.9
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 6.9e-66 254.6 230 58.7
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 9.0e-66 254.2 228 58.3
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-65 253.4 230 59.1
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.5e-65 253.4 221 61.1
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.4e-65 252.3 272 53.7
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 4.5e-65 251.9 230 58.7
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 2.2e-64 249.6 230 58.3
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 8.4e-64 247.7 201 63.7
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.1e-63 247.3 226 59.3
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.1e-63 247.3 177 75.7
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.9e-63 246.5 256 54.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.6e-62 243.4 199 61.8
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.6e-62 243.4 206 64.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 2.1e-62 243.0 208 63.5
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.1e-62 243.0 232 58.2
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.3e-61 239.6 188 65.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.3e-61 239.6 206 61.7
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 8.7e-61 237.7 177 72.9
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.1e-60 237.3 229 58.1
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.8e-58 229.9 179 67.0
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.8e-58 229.9 160 71.2
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 6.9e-58 228.0 197 63.5
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 4.5e-57 225.3 256 51.6
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.8e-56 222.2 220 56.4
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 7.1e-55 218.0 211 57.3
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.9e-53 212.2 196 59.7
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.9e-53 212.2 220 56.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 5.1e-53 211.8 221 54.8
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 6.7e-53 211.5 122 80.3
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.5e-52 210.3 231 54.5
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 7.4e-52 208.0 207 57.5
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.4e-50 203.8 230 53.0
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 8.4e-48 194.5 252 48.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.7e-45 184.9 213 53.1
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.3e-44 182.6 203 49.8
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 7.4e-44 181.4 171 60.8
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 3.7e-43 179.1 262 44.7
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 4.8e-43 178.7 119 69.7
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 4.8e-43 178.7 221 49.8
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 5.9e-41 171.8 176 56.8
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.3e-40 170.6 178 53.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-40 170.2 96 79.2
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 7.9e-38 161.4 180 52.2
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.0e-37 161.0 188 51.6
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 3.1e-34 149.4 208 44.2
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 5.5e-31 138.7 103 68.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.3e-24 117.5 165 45.5
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 5.0e-24 115.5 69 79.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 7.9e-22 108.2 175 42.9
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 7.4e-20 101.7 67 65.7
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.8e-19 99.8 57 73.7
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.9e-17 92.0 71 67.6
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 5.0e-16 89.0 68 70.6
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 5.0e-16 89.0 49 79.6
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.1e-15 87.8 50 72.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.2e-15 86.3 115 46.1
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 4.7e-14 82.4 48 81.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-13 81.3 48 81.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-13 80.9 48 81.2
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.3e-13 80.1 48 81.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.0e-13 79.7 48 79.2
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 3.0e-13 79.7 48 77.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.8e-11 73.2 43 79.1
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.7e-11 72.8 59 64.4
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.8e-11 72.4 90 48.9
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.3e-11 72.0 43 79.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 8.5e-08 61.6 42 66.7
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 7.2e-07 58.5 29 86.2


User provided reference genes

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