Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030184 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 2.2e-258 895.2 485 100.0
CSS0033732 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 4.4e-254 880.9 491 97.8
Actinidia20024 Actinidia chinensis HOM05D000104 ORTHO05D006071 1.2e-126 457.6 563 50.6
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 6.5e-125 451.8 410 61.5
vmacro23146 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 1.1e-116 424.5 332 67.5
vmacro23048 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 5.5e-116 422.2 332 67.2
Hma1.2p1_0512F.1_g169270 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 3.0e-77 293.5 490 44.3
GSVIVG01026450001 Vitis vinifera HOM05D000104 ORTHO05D006071 1.9e-76 290.8 325 52.9
Haze_25321 Corylus avellana HOM05D000104 ORTHO05D006071 6.4e-72 275.8 496 39.9
TAR628G1730 Trochodendron aralioides HOM05D000104 ORTHO05D006071 2.7e-70 270.4 325 49.5
Cfa002182 Carpinus fangiana HOM05D000104 ORTHO05D006071 3.6e-67 260.0 496 38.1
Ciclev10000096m.g Citrus clementina HOM05D000104 ORTHO05D006071 1.2e-65 255.0 382 42.9
QL10p041777 Quercus lobata HOM05D000104 ORTHO05D006071 2.6e-65 253.8 501 39.1
CiPaw.04G080100 Carya illinoinensis HOM05D000104 ORTHO05D006071 8.4e-64 248.8 496 37.7
Oeu009636.2 Olea europaea HOM05D000104 ORTHO05D006071 9.3e-63 245.4 454 39.4
Prupe.4G275700 Prunus persica HOM05D000104 ORTHO05D006071 9.3e-63 245.4 506 37.5
AUR62000507 Chenopodium quinoa HOM05D000104 ORTHO05D006071 3.5e-62 243.4 448 40.6
MSTRG.16996 Avicennia marina HOM05D000104 ORTHO05D006071 3.3e-60 236.9 497 37.8
Hund21803 Selenicereus undatus HOM05D000104 ORTHO05D006071 8.1e-59 232.3 411 40.9
Lj2C614G7 Lonicera japonica HOM05D000104 ORTHO05D006071 1.2e-57 228.4 454 36.6
EL10Ac4g09611 Beta vulgaris HOM05D000104 ORTHO05D006071 5.8e-57 226.1 455 41.1
TWI31G0382 Tripterygium wilfordii HOM05D000104 ORTHO05D006071 7.1e-55 219.2 528 39.0
AUR62006852 Chenopodium quinoa HOM05D000104 ORTHO05D006071 1.6e-54 218.0 447 37.4
RcHm_v2.0_Chr2g0122191 Rosa chinensis HOM05D000104 ORTHO05D006071 2.1e-54 217.6 309 46.0
Gohir.D09G003600 Gossypium hirsutum HOM05D000104 ORTHO05D006071 1.1e-52 211.8 338 41.7
SGA_v2.0_scaffold212G42200 Striga asiatica HOM05D000104 ORTHO05D006071 1.9e-52 211.1 485 35.5
CAN.G410.42 Capsicum annuum HOM05D000104 ORTHO05D006071 1.3e-51 208.4 347 42.7
Nitab4.5_0000316g0170 Nicotiana tabacum HOM05D000104 ORTHO05D006071 1.3e-51 208.4 509 37.9
Gohir.A09G004100 Gossypium hirsutum HOM05D000104 ORTHO05D006071 2.1e-51 207.6 339 41.0
Cc02_g29430 Coffea canephora HOM05D000104 ORTHO05D006071 5.3e-50 203.0 485 37.7
Nn1g08948 Nelumbo nucifera HOM05D000104 ORTHO05D006071 2.6e-49 200.7 348 42.8
Sopen01g030220 Solanum pennellii HOM05D000104 ORTHO05D006071 1.3e-48 198.4 301 44.5
CANSAT01G0184 Cannabis sativa HOM05D000104 ORTHO05D006071 3.8e-48 196.8 310 42.6
DCAR_020007 Daucus carota HOM05D000104 ORTHO05D006071 4.9e-48 196.4 530 33.6
Solyc01g068280.3 Solanum lycopersicum HOM05D000104 ORTHO05D006071 1.1e-47 195.3 557 35.2
Nitab4.5_0006307g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006071 1.4e-47 194.9 313 42.2
FvH4_1g24690 Fragaria vesca HOM05D000104 ORTHO05D006071 7.1e-47 192.6 317 42.6
FAN26G2158 Fragaria x ananassa HOM05D000104 ORTHO05D006071 9.3e-47 192.2 312 42.0
MD15G1135700 Malus domestica HOM05D000104 ORTHO05D006071 1.2e-46 191.8 316 40.8
Migut.B01201 Erythranthe guttata HOM05D000104 ORTHO05D006071 2.1e-46 191.0 527 34.0
Nn5g28449 Nelumbo nucifera HOM05D000104 ORTHO05D006071 2.7e-46 190.7 343 39.9
SalBow5G2719 Salvia bowleyana HOM05D000104 ORTHO05D006071 3.5e-46 190.3 481 33.7
Thecc.01G133200 Theobroma cacao HOM05D000104 ORTHO05D006071 4.6e-46 189.9 334 40.1
Peaxi162Scf00087g00224 Petunia axillaris HOM05D000104 ORTHO05D006071 6.0e-46 189.5 338 39.3
FAN19G1002 Fragaria x ananassa HOM05D000104 ORTHO05D006071 2.3e-45 187.6 318 42.1
Sc09g0002280 Simmondsia chinensis HOM05D000104 ORTHO05D006071 2.3e-45 187.6 462 35.9
Gorai.006G005000 Gossypium raimondii HOM05D000104 ORTHO05D006071 3.9e-45 186.8 478 32.8
COL.COLO4_35752 Corchorus olitorius HOM05D000104 ORTHO05D006071 1.9e-44 184.5 336 39.9
Ah.04g157970 Amaranthus hybridus HOM05D000104 ORTHO05D006071 2.5e-44 184.1 455 36.3
Potri.005G066600 Populus trichocarpa HOM05D000104 ORTHO05D006071 1.1e-42 178.7 397 35.3
Atru.chr4.943 Acer truncatum HOM05D000104 ORTHO05D006071 4.0e-42 176.8 531 31.6
Cpa.g.c40991 Carica papaya HOM05D000104 ORTHO05D006071 4.0e-42 176.8 348 38.8
Hma1.2p1_2601F.1_g325200 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 4.0e-42 176.8 292 39.4
MELO3C024599.2 Cucumis melo HOM05D000104 ORTHO05D006071 5.3e-42 176.4 331 38.7
Potri.007G102800 Populus trichocarpa HOM05D000104 ORTHO05D006071 2.0e-41 174.5 395 35.4
Manes.13G085000 Manihot esculenta HOM05D000104 ORTHO05D006071 1.0e-40 172.2 299 39.8
ECA240G1465 Erigeron canadensis HOM05D000104 ORTHO05D006071 1.4e-39 168.3 311 40.2
Sed0020852 Sechium edule HOM05D000104 ORTHO05D006071 5.5e-39 166.4 332 38.3
QL10p041836 Quercus lobata HOM05D000104 ORTHO05D006071 7.1e-39 166.0 298 39.3
CsaV3_6G041230 Cucumis sativus L. HOM05D000104 ORTHO05D006071 1.2e-38 165.2 330 37.9
arahy.Tifrunner.gnm1.ann1.H21J0D Arachis hypogaea HOM05D000104 ORTHO05D006071 1.0e-37 162.2 446 32.3
HanXRQChr13g0423701 Helianthus annuus HOM05D000104 ORTHO05D006071 2.3e-37 161.0 323 36.5
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 3.9e-37 160.2 442 32.8
Lsat_1_v5_gn_3_126201 Lactuca sativa HOM05D000104 ORTHO05D006071 6.7e-37 159.5 458 32.3
Sabra07G0084400 Salix brachista HOM05D000104 ORTHO05D006071 1.5e-36 158.3 393 34.1
THA.LOC104800148 Tarenaya hassleriana HOM05D000104 ORTHO05D006071 4.3e-36 156.8 393 33.6
ClCG01G015120 Citrullus lanatus HOM05D000104 ORTHO05D006071 5.7e-36 156.4 365 32.9
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 4.8e-35 153.3 393 32.1
C03p62400 Brassica napus HOM05D000104 ORTHO05D006071 1.2e-33 148.7 395 34.7
Aqoxy6G00301 Aquilegia oxysepala HOM05D000104 ORTHO05D006071 1.5e-33 148.3 340 37.9
PGR102G2777 Punica granatum HOM05D000104 ORTHO05D006071 3.4e-33 147.1 513 30.0
Carub.0008s2473 Capsella rubella HOM05D000104 ORTHO05D006071 3.8e-32 143.7 387 33.9
Eucgr.H05148 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.4e-31 141.7 508 29.1
CARHR277860 Cardamine hirsuta HOM05D000104 ORTHO05D006071 2.5e-31 141.0 374 33.7
CDE04G0721 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 3.2e-31 140.6 317 34.4
Phvul.002G274300 Phaseolus vulgaris HOM05D000104 ORTHO05D006071 9.4e-31 139.0 462 31.0
Lalb_Chr12g0203051 Lupinus albus HOM05D000104 ORTHO05D006071 2.1e-30 137.9 449 30.5
MBI03_g13493_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006071 2.1e-30 137.9 306 36.9
Sp2g27010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 2.1e-30 137.9 336 35.4
A06p30560 Brassica napus HOM05D000104 ORTHO05D006071 2.7e-30 137.5 393 33.6
BraA06t26005Z Brassica rapa HOM05D000104 ORTHO05D006071 2.7e-30 137.5 393 33.6
SHI11494 Sapria himalayana HOM05D000104 ORTHO05D006071 7.9e-30 136.0 310 35.8
BcaC01g02649 Brassica carinata HOM05D000104 ORTHO05D006071 1.8e-29 134.8 396 34.8
BolC3t18499H Brassica oleracea HOM05D000104 ORTHO05D006071 1.8e-29 134.8 399 33.8
CDE12G0860 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 1.8e-29 134.8 312 33.3
Ca_17624_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 1.8e-29 134.8 504 31.9
PSO528G0238 Papaver somniferum HOM05D000104 ORTHO05D006071 1.8e-29 134.8 336 33.6
Medtr8g094070 Medicago truncatula HOM05D000104 ORTHO05D006071 3.0e-29 134.0 317 33.1
PSO170G5372 Papaver somniferum HOM05D000104 ORTHO05D006071 3.9e-29 133.7 334 34.1
AT5G63950 Arabidopsis thaliana HOM05D000104 ORTHO05D006071 5.1e-29 133.3 388 32.7
BcaC01g02651 Brassica carinata HOM05D000104 ORTHO05D006071 6.7e-29 132.9 382 34.6
Glyma.08G001900 Glycine max HOM05D000104 ORTHO05D006071 1.1e-28 132.1 310 33.2
AL8G41210 Arabidopsis lyrata HOM05D000104 ORTHO05D006071 1.5e-28 131.7 443 31.2
TPR.G37376 Trifolium pratense HOM05D000104 ORTHO05D006071 2.5e-28 131.0 511 31.3
BcaB02g09760 Brassica carinata HOM05D000104 ORTHO05D006071 4.3e-28 130.2 385 33.5
VMungo0251G3768 Vigna mungo HOM05D000104 ORTHO05D006071 4.3e-28 130.2 498 28.3
Thhalv10003558m.g Eutrema salsugineum HOM05D000104 ORTHO05D006071 9.7e-28 129.0 376 31.6
Aa31LG1G17950 Aethionema arabicum HOM05D000104 ORTHO05D006071 1.3e-27 128.6 325 35.4
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 1.1e-26 125.6 311 33.8
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 4.1e-26 123.6 449 35.6
unitig_26.g9608 Utricularia gibba HOM05D000104 ORTHO05D006071 2.7e-22 110.9 318 31.1
MD15G1135400 Malus domestica HOM05D000104 ORTHO05D006071 1.5e-20 105.1 71 64.8
Glyma.05G193900 Glycine max HOM05D000104 ORTHO05D006071 1.5e-17 95.1 133 41.4
Os04g0692750 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 2.6e-17 94.4 302 30.1
Zm00001eb076670 Zea mays HOM05D000104 ORTHO05D006071 5.9e-17 93.2 336 28.0
ATR0188G008 Amborella trichopoda HOM05D000104 ORTHO05D006071 2.9e-16 90.9 309 27.8
Lsat_1_v5_gn_3_126241 Lactuca sativa HOM05D000104 ORTHO05D006071 3.8e-16 90.5 304 28.0
Medtr8g094080 Medicago truncatula HOM05D000104 ORTHO05D006071 1.9e-15 88.2 73 58.9
Eucgr.C01558 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.2e-14 85.5 54 70.4
Lj4g0017230 Lotus japonicus HOM05D000104 ORTHO05D006071 3.6e-14 84.0 76 55.3
Pp3c2_11030 Physcomitrium patens HOM05D000104 ORTHO05D006071 3.6e-14 84.0 269 28.6
SEGI_39157 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 6.1e-14 83.2 110 39.1
HPP92_000084 Vanilla planifolia HOM05D000104 ORTHO05D006071 2.3e-13 81.3 160 38.1
Actinidia06573 Actinidia chinensis HOM05D000104 ORTHO05D053007 2.4e-10 71.2 69 58.0
SEGI_32379 Sequoiadendron giganteum HOM05D000104 ORTHO05D008568 5.3e-10 70.1 150 31.3
AagrBONN_evm.TU.Sc2ySwM_340.353 Anthoceros agrestis HOM05D000104 ORTHO05D006071 9.1e-10 69.3 94 44.7
Pp3c14_20620 Physcomitrium patens HOM05D000104 ORTHO05D006071 2.0e-09 68.2 60 50.0
CBR_g37246 Chara braunii HOM05D000104 ORTHO05D006071 4.5e-09 67.0 95 43.2
SMO146G0288 Selaginella moellendorffii HOM05D000104 ORTHO05D006071 4.5e-09 67.0 40 62.5
Os04g0692700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 2.9e-08 64.3 41 61.0
Os01g0102800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D008568 5.0e-08 63.5 93 35.5
Zm00001eb127010 Zea mays HOM05D000104 ORTHO05D008568 6.5e-08 63.2 94 37.2
Pp3c15_23590 Physcomitrium patens HOM05D000104 ORTHO05D008568 2.5e-07 61.2 112 34.8
Os01g0636700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 3.2e-07 60.8 75 42.7
AT2G18760 Arabidopsis thaliana HOM05D000104 ORTHO05D008568 5.5e-07 60.1 118 35.6
COL.COLO4_04021 Corchorus olitorius HOM05D000104 ORTHO05D008568 5.5e-07 60.1 95 34.7
HanXRQChr10g0280821 Helianthus annuus HOM05D000104 ORTHO05D008568 5.5e-07 60.1 93 32.3
Lsat_1_v5_gn_9_10521 Lactuca sativa HOM05D000104 ORTHO05D008568 5.5e-07 60.1 96 35.4
Aa31LG2G21880 Aethionema arabicum HOM05D000104 ORTHO05D008568 7.2e-07 59.7 167 31.7
Cc01_g18180 Coffea canephora HOM05D000104 ORTHO05D008568 7.2e-07 59.7 91 37.4
ECA247G0422 Erigeron canadensis HOM05D000104 ORTHO05D008568 7.2e-07 59.7 93 31.2
MCO07G731 Micromonas commoda HOM05D000104 ORTHO05D006071 7.2e-07 59.7 48 54.2
CBR_g39569 Chara braunii HOM05D000104 ORTHO05D008568 9.4e-07 59.3 38 60.5
PGR044G2555 Punica granatum HOM05D000104 ORTHO05D008568 9.4e-07 59.3 98 34.7
Migut.N02212 Erythranthe guttata HOM05D000104 ORTHO05D008568 1.2e-06 58.9 88 35.2
PSO210G7140 Papaver somniferum HOM05D000104 ORTHO05D008568 1.2e-06 58.9 123 32.5
Thecc.01G255700 Theobroma cacao HOM05D000104 ORTHO05D008568 1.2e-06 58.9 95 33.7
Atru.chr5.1731 Acer truncatum HOM05D000104 ORTHO05D008568 1.6e-06 58.5 138 29.7
Dinv34639 Davidia involucrata HOM05D000104 ORTHO05D008568 2.1e-06 58.2 95 36.8
MD05G1194600 Malus domestica HOM05D000104 ORTHO05D008568 2.1e-06 58.2 87 34.5
Sabra05G0174900 Salix brachista HOM05D000104 ORTHO05D008568 2.1e-06 58.2 95 38.9
Ah.02g112060 Amaranthus hybridus HOM05D000104 ORTHO05D008568 2.7e-06 57.8 115 35.7
TPR.G5864 Trifolium pratense HOM05D000104 ORTHO05D008568 2.7e-06 57.8 125 32.0
Aqoxy2G03678 Aquilegia oxysepala HOM05D000104 ORTHO05D008568 3.6e-06 57.4 95 34.7
AL3G53180 Arabidopsis lyrata HOM05D000104 ORTHO05D008568 3.6e-06 57.4 76 40.8
Gohir.D08G209100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 3.6e-06 57.4 95 34.7
Gorai.004G221400 Gossypium raimondii HOM05D000104 ORTHO05D008568 3.6e-06 57.4 95 34.7
Mapoly0036s0084 Marchantia polymorpha HOM05D000104 ORTHO05D008568 3.6e-06 57.4 85 32.9
Mapoly0209s0008 Marchantia polymorpha HOM05D000104 ORTHO05D006071 3.6e-06 57.4 190 27.4
Phvul.007G191600 Phaseolus vulgaris HOM05D000104 ORTHO05D008568 3.6e-06 57.4 93 30.1
VMungo0720G2644 Vigna mungo HOM05D000104 ORTHO05D008568 3.6e-06 57.4 98 35.7
CARHR109360 Cardamine hirsuta HOM05D000104 ORTHO05D008568 4.7e-06 57.0 121 32.2
CDE04G2235 Ceratophyllum demersum HOM05D000104 ORTHO05D008568 4.7e-06 57.0 99 34.3
Nn1g06879 Nelumbo nucifera HOM05D000104 ORTHO05D008568 4.7e-06 57.0 125 31.2
Sopen09g028210 Solanum pennellii HOM05D000104 ORTHO05D008568 4.7e-06 57.0 145 26.9
CANSAT01G0880 Cannabis sativa HOM05D000104 ORTHO05D008568 6.1e-06 56.6 38 57.9
Cre03.g183350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006071 6.1e-06 56.6 40 60.0
Psat6g061320 Pisum sativum HOM05D000104 ORTHO05D008568 6.1e-06 56.6 132 25.8
GSVIVG01028359001 Vitis vinifera HOM05D000104 ORTHO05D008568 6.1e-06 56.6 99 33.3
Gohir.A08G191100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 8.0e-06 56.2 95 33.7
Medtr1g069755 Medicago truncatula HOM05D000104 ORTHO05D008568 8.0e-06 56.2 92 35.9
Sc24g0003180 Simmondsia chinensis HOM05D000104 ORTHO05D008568 8.0e-06 56.2 122 32.0
PGSC0003DMG400010292 Solanum tuberosum HOM05D000104 ORTHO05D008568 8.0e-06 56.2 145 26.2
THA.LOC104804044 Tarenaya hassleriana HOM05D000104 ORTHO05D008568 8.0e-06 56.2 128 31.2


User provided reference genes

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