Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030140 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D033904 1.6e-191 672.5 331 100.0
CSS0013252 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D033904 1.1e-96 357.5 268 74.3
CSS0031470 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 2.0e-77 293.5 308 57.1
Rhsim07G0246300 Rhododendron simsii HOM05D000917 ORTHO05D000764 1.4e-46 191.0 337 40.1
vmacro04342 Vaccinium macrocarpon HOM05D000917 ORTHO05D033904 1.6e-45 187.6 266 46.6
Dinv31829 Davidia involucrata HOM05D000917 ORTHO05D000764 3.7e-39 166.4 295 41.7
Actinidia15410 Actinidia chinensis HOM05D000917 ORTHO05D000764 8.1e-34 148.7 313 37.4
Cc10_g01840 Coffea canephora HOM05D000917 ORTHO05D000764 6.8e-33 145.6 278 37.1
Peaxi162Scf00438g00049 Petunia axillaris HOM05D000917 ORTHO05D000764 6.8e-33 145.6 290 36.6
DCAR_017477 Daucus carota HOM05D000917 ORTHO05D000764 2.1e-29 134.0 261 41.4
Lj4A26G46 Lonicera japonica HOM05D000917 ORTHO05D000764 3.0e-28 130.2 281 34.9
Nitab4.5_0001988g0080 Nicotiana tabacum HOM05D000917 ORTHO05D000764 3.9e-28 129.8 283 36.4
CiPaw.08G065200 Carya illinoinensis HOM05D000917 ORTHO05D000764 4.7e-26 122.9 263 36.1
Hma1.2p1_0638F.1_g193730 Hydrangea macrophylla HOM05D000917 ORTHO05D000764 6.2e-26 122.5 295 33.6
CAN.G311.9 Capsicum annuum HOM05D000917 ORTHO05D000764 8.1e-26 122.1 285 35.1
CiPaw.07G151800 Carya illinoinensis HOM05D000917 ORTHO05D000764 3.1e-25 120.2 299 32.1
Nitab4.5_0000192g0070 Nicotiana tabacum HOM05D000917 ORTHO05D000764 8.9e-25 118.6 309 34.3
TAR625G1417 Trochodendron aralioides HOM05D000917 ORTHO05D000764 1.5e-24 117.9 289 33.9
QL02p011305 Quercus lobata HOM05D000917 ORTHO05D000764 2.0e-24 117.5 287 32.1
DCAR_013859 Daucus carota HOM05D000917 ORTHO05D000764 2.2e-23 114.0 272 33.8
MD08G1014700 Malus domestica HOM05D000917 ORTHO05D000764 2.2e-23 114.0 293 33.8
Cfa013934 Carpinus fangiana HOM05D000917 ORTHO05D000764 2.9e-23 113.6 308 29.9
Peaxi162Scf00064g00065 Petunia axillaris HOM05D000917 ORTHO05D000764 3.8e-23 113.2 309 32.7
PGSC0003DMG400003725 Solanum tuberosum HOM05D000917 ORTHO05D000764 8.4e-23 112.1 307 32.6
RcHm_v2.0_Chr6g0302611 Rosa chinensis HOM05D000917 ORTHO05D000764 2.4e-22 110.5 280 35.4
TAR381G1266 Trochodendron aralioides HOM05D000917 ORTHO05D000764 3.2e-22 110.2 260 35.0
Haze_22617 Corylus avellana HOM05D000917 ORTHO05D000764 4.1e-22 109.8 282 31.9
Manes.05G149100 Manihot esculenta HOM05D000917 ORTHO05D000764 5.4e-22 109.4 286 33.6
MBI18_g09965_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 2.1e-21 107.5 309 34.0
CAN.G1925.7 Capsicum annuum HOM05D000917 ORTHO05D000764 2.7e-21 107.1 298 30.5
MD15G1014000 Malus domestica HOM05D000917 ORTHO05D000764 7.8e-21 105.5 316 32.0
Solyc04g081280.3 Solanum lycopersicum HOM05D000917 ORTHO05D000764 1.3e-20 104.8 306 31.4
Sopen04g034900 Solanum pennellii HOM05D000917 ORTHO05D000764 1.7e-20 104.4 306 31.4
TWI36G0418 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 2.5e-19 100.5 299 29.8
FAN27G3184 Fragaria x ananassa HOM05D000917 ORTHO05D000764 3.3e-19 100.1 301 33.9
MSTRG.25234 Avicennia marina HOM05D000917 ORTHO05D000764 7.3e-19 99.0 267 33.3
FAN20G1441 Fragaria x ananassa HOM05D000917 ORTHO05D000764 1.1e-17 95.1 303 32.0
Sc02g0008510 Simmondsia chinensis HOM05D000917 ORTHO05D000764 1.4e-17 94.7 302 31.1
Rhsim06G0022800 Rhododendron simsii HOM05D000917 ORTHO05D000764 1.8e-17 94.4 285 30.5
Nn6g32346 Nelumbo nucifera HOM05D000917 ORTHO05D000764 2.4e-17 94.0 250 33.2
PSO781G0270 Papaver somniferum HOM05D000917 ORTHO05D000764 4.0e-17 93.2 272 33.5
GSVIVG01009879001 Vitis vinifera HOM05D000917 ORTHO05D000764 5.2e-17 92.8 86 52.3
ECA246G2463 Erigeron canadensis HOM05D000917 ORTHO05D000764 6.9e-17 92.4 274 32.8
FvH4_2g38700 Fragaria vesca HOM05D000917 ORTHO05D000764 2.6e-16 90.5 289 34.3
Nn5g29327 Nelumbo nucifera HOM05D000917 ORTHO05D000764 4.4e-16 89.7 86 52.3
CANSAT35G1375 Cannabis sativa HOM05D000917 ORTHO05D000764 5.8e-16 89.4 282 31.6
Aqoxy5G01764 Aquilegia oxysepala HOM05D000917 ORTHO05D000764 1.7e-15 87.8 276 31.2
FAN15G1164 Fragaria x ananassa HOM05D000917 ORTHO05D000764 1.7e-15 87.8 304 31.9
arahy.Tifrunner.gnm1.ann1.XF1QK2 Arachis hypogaea HOM05D000917 ORTHO05D000764 2.9e-15 87.0 290 31.4
TWI56G1011 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 6.4e-15 85.9 310 29.0
Atru.chr13.317 Acer truncatum HOM05D000917 ORTHO05D000764 8.4e-15 85.5 343 27.4
arahy.Tifrunner.gnm1.ann1.IGC1S7 Arachis hypogaea HOM05D000917 ORTHO05D000764 8.4e-15 85.5 290 31.4
PSO700G0073 Papaver somniferum HOM05D000917 ORTHO05D000764 1.9e-14 84.3 278 33.1
Glyma.14G218000 Glycine max HOM05D000917 ORTHO05D000764 3.2e-14 83.6 287 30.7
Psat6g003680 Pisum sativum HOM05D000917 ORTHO05D000764 4.2e-14 83.2 265 30.9
PSO170G2341 Papaver somniferum HOM05D000917 ORTHO05D000764 7.1e-14 82.4 275 33.1
Cpa.g.sc26.32 Carica papaya HOM05D000917 ORTHO05D000764 2.7e-13 80.5 279 28.0
Eucgr.F01638 Eucalyptus grandis HOM05D000917 ORTHO05D000764 3.5e-13 80.1 285 33.3
THA.LOC104811387 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 3.5e-13 80.1 86 47.7
HanXRQChr12g0379411 Helianthus annuus HOM05D000917 ORTHO05D000764 6.0e-13 79.3 247 29.6
MSTRG.1204 Avicennia marina HOM05D000917 ORTHO05D000764 7.8e-13 79.0 205 30.2
PSO541G1877 Papaver somniferum HOM05D000917 ORTHO05D000764 7.8e-13 79.0 219 32.4
Oeu007335.1 Olea europaea HOM05D000917 ORTHO05D000764 1.0e-12 78.6 206 32.5
Phvul.001G007900 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 1.3e-12 78.2 284 30.3
Sabra05G0183600 Salix brachista HOM05D000917 ORTHO05D000764 3.9e-12 76.6 257 31.5
Thecc.08G042300 Theobroma cacao HOM05D000917 ORTHO05D000764 3.9e-12 76.6 249 28.9
PSO675G6048 Papaver somniferum HOM05D000917 ORTHO05D000764 5.1e-12 76.3 351 28.5
Lj4C796G5 Lonicera japonica HOM05D000917 ORTHO05D000764 8.7e-12 75.5 91 45.1
Solyc12g089280.2 Solanum lycopersicum HOM05D000917 ORTHO05D000764 8.7e-12 75.5 310 28.1
Ciclev10000087m.g Citrus clementina HOM05D000917 ORTHO05D000764 1.1e-11 75.1 260 30.4
Potri.005G237500 Populus trichocarpa HOM05D000917 ORTHO05D000764 1.1e-11 75.1 288 28.1
HPP92_025363 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.1e-11 75.1 315 29.2
Cpa.g.c37284 Carica papaya HOM05D000917 ORTHO05D000764 1.9e-11 74.3 74 45.9
ClCG09G021910 Citrullus lanatus HOM05D000917 ORTHO05D000764 1.9e-11 74.3 103 42.7
CsaV3_5G025260 Cucumis sativus L. HOM05D000917 ORTHO05D000764 1.9e-11 74.3 103 42.7
Thhalv10018062m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 1.9e-11 74.3 87 46.0
Sopen12g031150 Solanum pennellii HOM05D000917 ORTHO05D000764 2.5e-11 73.9 310 27.7
Duzib041G0621 Durio zibethinus HOM05D000917 ORTHO05D000764 3.3e-11 73.6 237 33.3
Aa31sc115G50 Aethionema arabicum HOM05D000917 ORTHO05D000764 7.3e-11 72.4 87 44.8
AUR62040580 Chenopodium quinoa HOM05D000917 ORTHO05D000764 1.6e-10 71.2 299 28.8
Glyma.17G257100 Glycine max HOM05D000917 ORTHO05D000764 2.8e-10 70.5 283 30.4
MELO3C002953.2 Cucumis melo HOM05D000917 ORTHO05D000764 4.8e-10 69.7 95 42.1
Carub.0002s2249 Capsella rubella HOM05D000917 ORTHO05D000764 6.2e-10 69.3 112 37.5
Lalb_Chr24g0398741 Lupinus albus HOM05D000917 ORTHO05D000764 6.2e-10 69.3 265 27.9
BolC2t09322H Brassica oleracea HOM05D000917 ORTHO05D000764 8.1e-10 68.9 142 37.3
CDE02G2961 Ceratophyllum demersum HOM05D000917 ORTHO05D000764 8.1e-10 68.9 83 47.0
THA.LOC104809408 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 8.1e-10 68.9 236 28.8
BcaB05g24928 Brassica carinata HOM05D000917 ORTHO05D000764 1.1e-09 68.6 103 41.7
TPR.G34371 Trifolium pratense HOM05D000917 ORTHO05D000764 1.1e-09 68.6 110 36.4
VMungo0647G2420 Vigna mungo HOM05D000917 ORTHO05D000764 1.1e-09 68.6 294 28.2
VMungo0251G2960 Vigna mungo HOM05D000917 ORTHO05D000764 1.4e-09 68.2 84 45.2
Lj5g0016062 Lotus japonicus HOM05D000917 ORTHO05D000764 1.8e-09 67.8 285 27.7
Os01g0872700 Oryza sativa ssp. japonica HOM05D000917 ORTHO05D000764 1.8e-09 67.8 304 32.2
BcaC03g15606 Brassica carinata HOM05D000917 ORTHO05D000764 3.1e-09 67.0 98 40.8
C02p33820 Brassica napus HOM05D000917 ORTHO05D000764 3.1e-09 67.0 98 40.8
PSO210G7244 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-09 67.0 85 44.7
PSO478G3549 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-09 67.0 85 44.7
PSO541G0541 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-09 67.0 85 44.7
PSO675G2904 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-09 67.0 85 44.7
PSO832G1120 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-09 67.0 85 44.7
AT1G75660 Arabidopsis thaliana HOM05D000917 ORTHO05D000764 4.0e-09 66.6 102 38.2
Duzib093G1078 Durio zibethinus HOM05D000917 ORTHO05D000764 4.0e-09 66.6 230 28.7
Glyma.15G147100 Glycine max HOM05D000917 ORTHO05D000764 4.0e-09 66.6 75 49.3
Gohir.A05G257200 Gossypium hirsutum HOM05D000917 ORTHO05D000764 5.3e-09 66.2 260 30.0
AL2G35640 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 6.9e-09 65.9 118 34.7
AUR62026673 Chenopodium quinoa HOM05D000917 ORTHO05D000764 6.9e-09 65.9 299 28.4
ECA238G2273 Erigeron canadensis HOM05D000917 ORTHO05D000764 6.9e-09 65.9 62 50.0
Gohir.D05G258700 Gossypium hirsutum HOM05D000917 ORTHO05D000764 6.9e-09 65.9 271 31.4
Zm00001eb171750 Zea mays HOM05D000917 ORTHO05D000764 6.9e-09 65.9 296 27.7
SHI08078 Sapria himalayana HOM05D000917 ORTHO05D000764 9.0e-09 65.5 61 45.9
EL10Ac1g01590 Beta vulgaris HOM05D000917 ORTHO05D000764 2.0e-08 64.3 283 29.7
Phvul.003G280400 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 2.0e-08 64.3 57 54.4
Ca_13409_v3 Cicer arietinum L. HOM05D000917 ORTHO05D000764 2.6e-08 63.9 313 26.8
ATR0955G006 Amborella trichopoda HOM05D000917 ORTHO05D038316 3.4e-08 63.5 267 27.7
Gohir.A05G187400 Gossypium hirsutum HOM05D000917 ORTHO05D000764 3.4e-08 63.5 74 40.5
Gorai.009G270300 Gossypium raimondii HOM05D000917 ORTHO05D000764 3.4e-08 63.5 271 31.0
Lalb_Chr22g0354381 Lupinus albus HOM05D000917 ORTHO05D000764 3.4e-08 63.5 302 26.8
Hund24102 Selenicereus undatus HOM05D000917 ORTHO05D000764 3.4e-08 63.5 290 26.6
Ah.05g168130 Amaranthus hybridus HOM05D000917 ORTHO05D000764 5.8e-08 62.8 274 28.8
Thecc.03G051000 Theobroma cacao HOM05D000917 ORTHO05D000764 9.9e-08 62.0 264 27.3
HanXRQChr15g0471811 Helianthus annuus HOM05D000917 ORTHO05D000764 2.9e-07 60.5 263 28.1
Gohir.D05G190300 Gossypium hirsutum HOM05D000917 ORTHO05D000764 3.8e-07 60.1 70 41.4
Gorai.009G195600 Gossypium raimondii HOM05D000917 ORTHO05D000764 3.8e-07 60.1 70 41.4
Sp5g30760 Schrenkiella parvula HOM05D000917 ORTHO05D000764 3.8e-07 60.1 91 40.7
CSS0011511 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 4.9e-07 59.7 54 53.7
CSS0041372 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 4.9e-07 59.7 54 53.7
Sed0009325 Sechium edule HOM05D000917 ORTHO05D000764 4.9e-07 59.7 296 26.0
TPR.G7005 Trifolium pratense HOM05D000917 ORTHO05D000764 4.9e-07 59.7 58 51.7
Aa31LG3G570 Aethionema arabicum HOM05D000917 ORTHO05D000764 6.4e-07 59.3 89 39.3
Psat3g007000 Pisum sativum HOM05D000917 ORTHO05D000764 8.4e-07 58.9 71 42.3
Prupe.1G367600 Prunus persica HOM05D000917 ORTHO05D000764 8.4e-07 58.9 244 30.3
FAN08G2884 Fragaria x ananassa HOM05D000917 ORTHO05D000764 1.1e-06 58.5 218 29.4
Hund05196 Selenicereus undatus HOM05D000917 ORTHO05D000764 1.1e-06 58.5 260 27.7
ATR0074G003 Amborella trichopoda HOM05D000917 ORTHO05D038316 1.9e-06 57.8 262 26.3
C06p49610 Brassica napus HOM05D000917 ORTHO05D000764 3.2e-06 57.0 90 37.8
BolC6t39999H Brassica oleracea HOM05D000917 ORTHO05D000764 3.2e-06 57.0 90 37.8
BraA07t31654Z Brassica rapa HOM05D000917 ORTHO05D000764 3.2e-06 57.0 90 37.8
Medtr7g114570 Medicago truncatula HOM05D000917 ORTHO05D000764 3.2e-06 57.0 51 52.9
RcHm_v2.0_Chr3g0452231 Rosa chinensis HOM05D000917 ORTHO05D000764 4.2e-06 56.6 66 42.4
Prupe.6G338500 Prunus persica HOM05D000917 ORTHO05D000764 5.4e-06 56.2 64 40.6
Actinidia05759 Actinidia chinensis HOM05D000917 ORTHO05D000764 7.1e-06 55.8 55 54.5
DCAR_001928 Daucus carota HOM05D000917 ORTHO05D000764 7.1e-06 55.8 56 50.0
unitig_578.g16094 Utricularia gibba HOM05D000917 ORTHO05D000764 7.1e-06 55.8 53 52.8
Aa31LG2G12310 Aethionema arabicum HOM05D000917 ORTHO05D000764 9.3e-06 55.5 67 40.3
A07p41190 Brassica napus HOM05D000917 ORTHO05D000764 9.3e-06 55.5 61 45.9
HPP92_012139 Vanilla planifolia HOM05D000917 ORTHO05D000764 9.3e-06 55.5 52 51.9


User provided reference genes

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