Gene: Lalb_Chr22g0354381

General Information

Structural Information

  • Species Lupinus albus
  • Gene Identifier Lalb_Chr22g0354381
  • Transcript Identifier Lalb_Chr22g0354381
  • Gene Type Coding gene
  • Location Lalb_Chr22 : 2791654-2800326 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lalb_Chr22g0354381.v1
  • pacid 44539147
  • uniprot A0A6A4NC43

Descriptions

  • Description K12619 - 5'-3' exoribonuclease 2 (XRN2, RAT1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT1G75660
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G75660
GO:0000967
ISO
PLAZA Integrative OrthologyrRNA 5'-end processing AT1G75660
GO:0071035
ISO
PLAZA Integrative Orthologynuclear polyadenylation-dependent rRNA catabolic process AT1G75660
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Cre06.g280050
GO:0004534
IEA
GOA Database5'-3' exoribonuclease activity
GO:0004534
IEA
InterPro5'-3' exoribonuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041412 Xrn1, helical domain
IPR001878 Zinc finger, CCHC-type
IPR027073 5'-3' exoribonuclease
IPR004859 Putative 5-3 exonuclease
IPR036875 Zinc finger, CCHC-type superfamily
IPR017151 5'-3' exoribonuclease type 2
Mapman id Description
16.4.3.2 RNA processing.RNA surveillance.non-canonical RNA decapping and decay.exoribonuclease (RAT1/XRN2)