Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 0.0e+00 1390.2 713 100.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.5e-291 1003.8 731 71.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.3e-267 926.4 730 66.2
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.3e-251 873.2 731 64.3
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.1e-245 853.6 735 63.7
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 7.9e-212 741.1 720 56.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.0e-207 726.5 731 55.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.0e-206 721.8 745 55.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.4e-205 720.3 745 54.9
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.0e-203 714.1 734 53.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.5e-202 710.3 732 53.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 2.4e-192 676.4 751 51.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 5.3e-192 675.2 739 52.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.8e-190 669.1 722 52.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.1e-189 667.5 869 46.7
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.5e-189 666.4 708 53.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 7.2e-189 664.8 738 52.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 6.1e-188 661.8 725 51.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.1e-188 661.8 740 52.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.8e-187 660.2 744 50.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.6e-186 656.4 753 50.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.7e-185 653.7 738 49.9
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 3.7e-185 652.5 738 49.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.1e-184 649.0 720 51.7
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.3e-184 648.7 715 50.5
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 3.5e-183 646.0 749 49.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.0e-182 642.1 718 50.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.1e-181 641.0 712 50.7
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.5e-181 640.6 751 49.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.9e-181 640.2 731 49.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.5e-181 638.6 741 49.8
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.2e-178 630.9 750 49.1
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 4.4e-178 629.0 722 51.0
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 9.8e-178 627.9 739 49.0
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.3e-177 625.2 711 51.1
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.1e-176 624.4 710 51.1
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.4e-176 623.2 745 47.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 5.4e-176 622.1 708 49.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.7e-175 619.8 728 50.5
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 7.7e-175 618.2 599 56.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 7.7e-175 618.2 713 49.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 8.5e-174 614.8 739 48.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 5.5e-173 612.1 726 49.7
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.2e-172 610.9 757 47.4
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.6e-172 610.5 724 47.2
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.6e-172 609.4 726 49.6
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 8.0e-172 608.2 718 48.7
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.8e-171 604.7 709 48.7
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.2e-170 604.4 708 49.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.8e-170 601.3 722 50.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.7e-169 600.5 726 48.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-169 600.1 760 47.1
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.2e-169 600.1 709 49.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 4.9e-169 599.0 709 48.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.4e-168 595.5 754 47.2
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.5e-167 592.8 757 46.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 7.7e-167 591.7 734 46.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.9e-165 587.0 747 45.4
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 6.1e-164 582.0 701 47.2
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 8.0e-164 581.6 401 73.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 9.8e-162 574.7 712 47.8
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 6.4e-161 572.0 735 45.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.2e-159 567.8 730 45.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.9e-158 562.8 715 45.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.3e-157 558.5 752 45.3
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.7e-156 555.8 693 49.8
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.3e-155 553.5 721 44.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.5e-154 550.8 733 44.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.4e-154 549.3 708 44.6
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.9e-153 545.8 714 45.7
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.4e-152 544.3 714 45.5
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.2e-151 541.2 742 45.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.6e-151 540.8 712 46.5
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 3.5e-151 539.7 730 43.7
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.3e-150 537.0 715 44.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 9.5e-149 531.6 711 46.3
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.6e-148 529.6 615 49.4
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 4.0e-147 526.2 526 56.5
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.0e-146 523.9 786 43.0
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.7e-145 520.8 407 65.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.3e-142 511.1 704 42.8
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 3.3e-141 506.5 717 43.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.8e-140 503.4 731 43.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 4.7e-140 502.7 737 41.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.1e-136 491.5 717 44.8
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.9e-133 480.7 712 43.0
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 4.7e-132 476.1 721 41.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.4e-131 473.8 722 40.3
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.6e-130 470.3 727 40.0
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.6e-130 468.8 696 42.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-129 468.0 731 40.6
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.2e-128 463.0 548 49.1
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 5.4e-128 462.6 505 52.5
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.4e-128 462.6 683 40.3
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.6e-127 461.1 711 41.8
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.1e-125 454.9 705 41.8
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-125 454.5 548 48.7
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.0e-122 444.1 726 40.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.5e-119 433.3 718 40.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.0e-118 430.3 717 40.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.5e-117 427.9 688 41.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.5e-117 427.9 712 39.6
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.3e-116 424.9 714 39.9
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.3e-116 424.9 712 39.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.8e-113 413.3 471 51.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.9e-109 401.0 686 39.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.5e-109 400.6 590 41.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.0e-107 393.3 716 37.2
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.7e-105 387.9 713 36.6
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.6e-103 381.3 692 37.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 7.9e-103 379.0 433 47.6
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 5.0e-97 359.8 724 37.0
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.1e-93 348.6 730 33.2
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.3e-93 347.1 551 42.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.2e-88 330.5 726 33.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.2e-87 328.6 490 42.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.4e-86 325.1 363 51.8
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 4.5e-82 310.1 706 31.3
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-80 303.9 413 44.3
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-77 295.4 540 36.5
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 5.3e-75 286.6 299 53.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.1e-72 278.9 370 44.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.6e-66 258.5 237 59.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.5e-66 256.9 398 40.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 9.1e-59 232.6 732 28.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 6.8e-54 216.5 397 37.5
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.5e-48 198.7 165 62.4
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 5.6e-48 196.8 810 25.1
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.9e-44 183.7 141 63.8
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.6e-42 178.7 646 25.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-42 178.7 205 50.2
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.0e-39 166.4 237 41.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-37 162.2 124 63.7
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.4e-37 161.0 124 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-34 150.6 591 24.9
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-33 149.1 267 35.6
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.3e-33 148.3 246 41.1
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.3e-32 144.4 496 29.2
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.4e-29 134.0 100 60.0
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.7e-28 131.0 508 25.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.9e-28 130.6 334 32.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.2e-27 126.3 210 37.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.7e-20 105.5 172 40.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 8.7e-17 93.2 154 39.0
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 4.7e-15 87.4 133 40.6
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 8.1e-15 86.7 61 62.3
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 5.2e-14 84.0 198 30.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.2e-12 78.6 133 36.8
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.9e-12 78.2 286 25.9
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.1e-11 76.3 76 51.3
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.9e-11 75.5 137 38.0
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.4e-11 73.9 80 46.2
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.8e-10 70.1 65 60.0
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.0e-09 68.2 98 39.8
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 3.9e-09 67.8 54 63.0
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 5.1e-09 67.4 54 53.7
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 8.7e-09 66.6 74 41.9
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-08 65.9 54 61.1
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.6e-08 63.9 61 55.7
vmacro19783 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.6e-07 62.4 159 30.8
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.1e-07 62.0 205 24.4
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 9.0e-06 56.6 43 58.1


User provided reference genes

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