Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 0.0e+00 1290.4 658 100.0
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 3.8e-269 931.4 658 74.0
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 2.1e-259 899.0 660 71.5
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 4.0e-250 868.2 644 71.3
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.1e-239 833.6 663 65.6
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.3e-229 800.0 663 64.9
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.2e-224 782.7 704 61.1
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.4e-223 778.1 665 62.6
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.4e-215 752.7 636 63.7
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.5e-214 748.8 664 62.3
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.5e-209 733.4 668 60.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.9e-208 729.2 712 56.6
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.4e-208 728.0 669 60.1
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 6.4e-208 728.0 674 61.1
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.4e-207 726.1 668 60.5
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 4.1e-207 725.3 655 60.8
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.2e-206 723.8 667 60.3
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 2.3e-205 719.5 669 60.2
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 2.1e-203 713.0 707 55.6
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 6.2e-203 711.4 706 55.9
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.1e-202 710.7 733 53.9
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.4e-202 710.3 699 56.5
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.2e-201 707.2 723 53.5
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.5e-201 706.8 665 57.1
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 5.8e-201 704.9 711 54.4
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.3e-200 703.7 712 54.8
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.7e-200 703.4 728 55.9
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 2.9e-200 702.6 664 57.4
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 6.4e-200 701.4 704 56.7
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 5.4e-199 698.4 709 56.0
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 4.6e-198 695.3 668 56.3
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 6.6e-197 691.4 709 55.4
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 8.7e-197 691.0 706 54.2
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.1e-195 686.4 767 52.7
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 6.2e-195 684.9 727 52.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.1e-195 684.5 566 64.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.2e-193 680.6 661 57.2
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.6e-193 679.5 698 55.7
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 2.6e-193 679.5 707 55.2
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.8e-193 678.3 652 57.4
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.3e-192 677.2 705 52.8
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 2.9e-192 676.0 716 54.2
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 3.8e-192 675.6 701 55.3
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.3e-189 666.4 681 55.1
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 6.6e-189 664.8 696 54.6
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.1e-188 664.1 669 55.8
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.9e-188 663.3 663 55.4
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.2e-187 658.3 668 55.8
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.4e-186 657.1 711 53.9
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.8e-186 656.8 720 52.6
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 9.0e-186 654.4 673 54.5
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.6e-185 652.9 714 52.5
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.4e-185 652.5 664 56.0
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 3.8e-184 649.0 668 54.2
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 6.4e-184 648.3 669 56.1
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 9.3e-183 644.4 708 51.3
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.0e-181 641.0 707 53.0
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.8e-181 640.2 752 48.8
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 2.3e-181 639.8 671 53.9
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 7.4e-180 634.8 669 54.7
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.7e-179 632.5 760 48.4
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 4.8e-179 632.1 664 53.8
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 8.1e-179 631.3 732 51.5
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.1e-178 629.4 795 48.2
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.0e-177 626.7 665 54.6
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.8e-176 622.5 712 50.4
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 4.9e-176 622.1 714 50.6
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.4e-175 620.5 723 48.7
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 9.3e-175 617.8 667 52.6
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 6.0e-174 615.1 671 53.8
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.1e-172 610.9 729 48.8
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 4.8e-171 605.5 666 53.6
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 5.3e-170 602.1 717 49.0
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.6e-166 590.5 615 55.0
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 6.7e-165 585.1 661 51.3
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-162 577.0 717 47.4
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 2.4e-162 576.6 717 47.4
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.5e-159 566.6 675 48.6
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.3e-155 554.3 737 45.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.7e-155 552.7 717 46.3
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.1e-154 551.2 728 46.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.8e-154 550.4 733 45.3
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.9e-152 543.1 660 49.7
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 2.5e-151 540.0 715 45.5
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.7e-150 536.6 737 44.6
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.4e-149 534.3 763 43.1
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.5e-148 530.8 762 45.4
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 5.7e-148 528.9 646 50.5
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.2e-147 526.9 633 51.3
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.6e-145 520.0 692 46.2
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 5.9e-145 518.8 646 47.7
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.5e-140 504.2 861 40.4
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.6e-137 494.2 654 45.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.0e-136 491.5 466 58.4
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 5.5e-135 485.7 684 43.9
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.4e-132 476.5 696 43.1
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 2.2e-131 473.8 496 53.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 2.7e-126 456.8 659 44.6
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 2.6e-124 450.3 820 38.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 8.3e-123 445.3 855 37.7
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 9.2e-122 441.8 832 38.0
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.6e-121 441.0 854 37.5
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 5.8e-108 396.0 826 36.3
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 2.5e-103 380.6 744 37.0
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.6e-97 361.3 669 37.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 5.1e-96 356.3 674 36.6
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 6.6e-96 355.9 638 41.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 8.4e-91 339.0 668 36.2
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 2.5e-87 327.4 347 55.0
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.3e-87 327.0 663 37.3
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 4.5e-76 290.0 736 31.1
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.8e-75 287.0 636 34.7
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 8.1e-70 269.2 365 45.2
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.7e-65 254.2 277 51.3
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.0e-64 252.3 883 29.1
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 2.8e-62 244.2 660 29.4
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 5.8e-60 236.5 202 59.4
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.2e-58 230.7 361 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.7e-49 201.1 653 26.3
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.6e-44 184.5 126 70.6
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.0e-43 182.6 176 53.4
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.0e-43 182.6 176 53.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.6e-41 175.3 130 70.0
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.8e-40 171.8 306 33.3
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.8e-35 154.1 195 42.6
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.0e-29 133.3 82 81.7
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 5.9e-28 130.2 244 38.1
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-25 122.1 103 59.2
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 5.5e-18 97.1 93 53.8
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 3.6e-17 94.4 127 41.7
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.5e-15 89.0 100 47.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.7e-15 87.0 174 37.9
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 2.7e-12 78.2 94 54.3
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.0e-08 66.2 54 61.1


User provided reference genes

Program Settings