Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028872 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 4.0e-113 411.4 198 100.0
CSS0017127 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 7.3e-99 364.0 172 99.4
CSS0025614 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 1.8e-81 306.2 176 83.0
CSS0041603 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 2.4e-81 305.8 176 83.0
Dinv26932 Davidia involucrata HOM05D003401 ORTHO05D003906 2.0e-80 302.8 172 81.4
Dinv04047 Davidia involucrata HOM05D003401 ORTHO05D003906 1.4e-78 296.6 185 76.2
Thecc.01G072800 Theobroma cacao HOM05D003401 ORTHO05D003906 1.4e-78 296.6 175 80.0
Actinidia36431 Actinidia chinensis HOM05D003401 ORTHO05D003906 1.9e-78 296.2 184 78.3
CiPaw.02G002500 Carya illinoinensis HOM05D003401 ORTHO05D003906 2.4e-78 295.8 185 73.0
Potri.005G148800 Populus trichocarpa HOM05D003401 ORTHO05D003906 2.4e-78 295.8 185 77.8
Gorai.008G083400 Gossypium raimondii HOM05D003401 ORTHO05D003906 2.3e-76 289.3 171 77.2
Gohir.A12G077500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 3.0e-76 288.9 171 76.6
Sabra05G0118500 Salix brachista HOM05D003401 ORTHO05D003906 5.1e-76 288.1 172 79.1
Manes.12G114200 Manihot esculenta HOM05D003401 ORTHO05D003906 8.7e-76 287.3 172 78.5
Atru.chr3.1011_Atru.chr3.1012 Acer truncatum HOM05D003401 ORTHO05D003906 2.1e-74 282.7 175 77.1
Ciclev10025552m.g Citrus clementina HOM05D003401 ORTHO05D003906 3.6e-74 282.0 172 75.0
Duzib147G0481 Durio zibethinus HOM05D003401 ORTHO05D003906 8.1e-74 280.8 175 76.0
RcHm_v2.0_Chr2g0108051 Rosa chinensis HOM05D003401 ORTHO05D003906 8.1e-74 280.8 177 75.1
Haze_15282 Corylus avellana HOM05D003401 ORTHO05D003906 1.1e-73 280.4 173 75.7
COL.COLO4_11578 Corchorus olitorius HOM05D003401 ORTHO05D003906 1.8e-73 279.6 181 73.5
Manes.13G111500 Manihot esculenta HOM05D003401 ORTHO05D003906 6.9e-73 277.7 177 73.4
Rhsim10G0099500 Rhododendron simsii HOM05D003401 ORTHO05D003906 9.0e-73 277.3 185 72.4
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 1.5e-72 276.6 172 76.2
FvH4_1g17720 Fragaria vesca HOM05D003401 ORTHO05D003906 1.5e-72 276.6 177 74.6
Duzib264G0307 Durio zibethinus HOM05D003401 ORTHO05D003906 2.6e-72 275.8 175 74.3
FAN19G2988 Fragaria x ananassa HOM05D003401 ORTHO05D003906 3.8e-71 271.9 175 74.3
TAR381G1581 Trochodendron aralioides HOM05D003401 ORTHO05D003906 3.8e-71 271.9 175 70.9
Lalb_Chr05g0213711 Lupinus albus HOM05D003401 ORTHO05D003906 9.3e-70 267.3 169 71.6
Lj4A163G75 Lonicera japonica HOM05D003401 ORTHO05D003906 1.2e-69 266.9 177 74.6
SalBow3G0329 Salvia bowleyana HOM05D003401 ORTHO05D003906 1.2e-69 266.9 185 69.2
Phvul.003G234900 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 1.6e-69 266.5 177 70.6
FAN28G1357 Fragaria x ananassa HOM05D003401 ORTHO05D003906 2.1e-69 266.2 175 72.6
VMungo1215G2501 Vigna mungo HOM05D003401 ORTHO05D003906 7.9e-69 264.2 172 72.1
Sed0011165 Sechium edule HOM05D003401 ORTHO05D003906 1.0e-68 263.8 179 69.8
FAN26G0363 Fragaria x ananassa HOM05D003401 ORTHO05D003906 1.8e-68 263.1 175 72.0
MD02G1186200 Malus domestica HOM05D003401 ORTHO05D003906 1.8e-68 263.1 175 72.0
Glyma.01G194300 Glycine max HOM05D003401 ORTHO05D003906 3.0e-68 262.3 176 69.9
Oeu017643.1 Olea europaea HOM05D003401 ORTHO05D003906 3.0e-68 262.3 172 72.1
Glyma.11G047600 Glycine max HOM05D003401 ORTHO05D003906 6.7e-68 261.2 182 67.6
Lalb_Chr09g0334091 Lupinus albus HOM05D003401 ORTHO05D003906 6.7e-68 261.2 171 69.0
PGR004G2146 Punica granatum HOM05D003401 ORTHO05D003906 6.7e-68 261.2 170 74.7
MSTRG.23670 Avicennia marina HOM05D003401 ORTHO05D003906 8.7e-68 260.8 172 72.1
TWI53G1432 Tripterygium wilfordii HOM05D003401 ORTHO05D003906 1.1e-67 260.4 172 69.8
DCAR_010819 Daucus carota HOM05D003401 ORTHO05D003906 1.9e-67 259.6 177 68.9
Nitab4.5_0002119g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 2.5e-67 259.2 176 69.3
VMungo0251G1011 Vigna mungo HOM05D003401 ORTHO05D003906 2.5e-67 259.2 177 69.5
MD15G1297600 Malus domestica HOM05D003401 ORTHO05D003906 4.3e-67 258.5 174 71.3
Nn5g30596 Nelumbo nucifera HOM05D003401 ORTHO05D003906 2.8e-66 255.8 185 66.5
MD02G1186100 Malus domestica HOM05D003401 ORTHO05D003906 4.8e-66 255.0 177 71.8
Phvul.002G010600 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 4.8e-66 255.0 172 70.3
Peaxi162Scf00548g00653 Petunia axillaris HOM05D003401 ORTHO05D003906 6.2e-66 254.6 185 67.0
SGA_v2.0_scaffold15G07458 Striga asiatica HOM05D003401 ORTHO05D003906 8.1e-66 254.2 172 69.8
TAR625G1105 Trochodendron aralioides HOM05D003401 ORTHO05D003906 2.4e-65 252.7 180 65.0
Glyma.17G160700 Glycine max HOM05D003401 ORTHO05D003906 4.0e-65 251.9 177 67.8
CAN.G1075.38 Capsicum annuum HOM05D003401 ORTHO05D003906 1.2e-64 250.4 180 65.6
Nitab4.5_0000142g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 3.4e-64 248.8 176 65.9
Ca_24692_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 5.8e-64 248.1 178 66.9
ClCG02G012620 Citrullus lanatus HOM05D003401 ORTHO05D003906 5.8e-64 248.1 179 65.9
THA.LOC104821200 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 1.3e-63 246.9 174 67.2
ECA232G0883 Erigeron canadensis HOM05D003401 ORTHO05D003906 3.8e-63 245.4 172 69.2
Lj2g0017752 Lotus japonicus HOM05D003401 ORTHO05D003906 6.5e-63 244.6 171 66.7
Cc07_g07100 Coffea canephora HOM05D003401 ORTHO05D003906 8.4e-63 244.2 176 68.2
Medtr5g015460 Medicago truncatula HOM05D003401 ORTHO05D003906 1.4e-62 243.4 179 66.5
Solyc02g092360.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 1.4e-62 243.4 176 64.8
Cpa.g.sc6.15 Carica papaya HOM05D003401 ORTHO05D003906 1.9e-62 243.0 141 79.4
Migut.H00347 Erythranthe guttata HOM05D003401 ORTHO05D003906 1.9e-62 243.0 190 64.2
Sed0014153 Sechium edule HOM05D003401 ORTHO05D003906 1.9e-62 243.0 179 67.0
Eucgr.H02307 Eucalyptus grandis HOM05D003401 ORTHO05D003906 2.5e-62 242.7 172 65.1
Oeu011987.2 Olea europaea HOM05D003401 ORTHO05D003906 3.2e-62 242.3 186 64.0
Lsat_1_v5_gn_4_161660 Lactuca sativa HOM05D003401 ORTHO05D003906 7.1e-62 241.1 183 65.0
Sopen02g036910 Solanum pennellii HOM05D003401 ORTHO05D003906 9.3e-62 240.7 171 65.5
MELO3C020910.2 Cucumis melo HOM05D003401 ORTHO05D003906 2.1e-61 239.6 179 65.4
Lj4g0026628 Lotus japonicus HOM05D003401 ORTHO05D003906 2.1e-61 239.6 170 65.3
Psat0s281g0040 Pisum sativum HOM05D003401 ORTHO05D003906 1.8e-60 236.5 173 65.9
PGSC0003DMG400021417 Solanum tuberosum HOM05D003401 ORTHO05D003906 1.8e-60 236.5 176 64.8
Prupe.6G220400 Prunus persica HOM05D003401 ORTHO05D003906 3.9e-60 235.3 153 72.5
GSVIVG01000105001 Vitis vinifera HOM05D003401 ORTHO05D003906 6.7e-60 234.6 130 83.1
HanXRQChr12g0373041 Helianthus annuus HOM05D003401 ORTHO05D003906 2.5e-59 232.6 172 65.1
Aqoxy6G02609 Aquilegia oxysepala HOM05D003401 ORTHO05D003906 5.7e-59 231.5 172 62.2
Eucgr.I00703 Eucalyptus grandis HOM05D003401 ORTHO05D003906 5.7e-59 231.5 172 65.1
HanXRQChr12g0373051 Helianthus annuus HOM05D003401 ORTHO05D003906 9.6e-59 230.7 170 65.9
MSTRG.2818 Avicennia marina HOM05D003401 ORTHO05D003906 2.1e-58 229.6 176 61.4
Nitab4.5_0001417g0040 Nicotiana tabacum HOM05D003401 ORTHO05D003906 3.7e-58 228.8 179 62.6
Gohir.A02G151500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 4.8e-58 228.4 175 62.9
Gohir.D03G028900 Gossypium hirsutum HOM05D003401 ORTHO05D003906 6.3e-58 228.0 175 63.4
arahy.Tifrunner.gnm1.ann1.DKM4K2 Arachis hypogaea HOM05D003401 ORTHO05D003906 1.1e-57 227.3 180 58.3
EL10Ac6g15618 Beta vulgaris HOM05D003401 ORTHO05D003906 1.4e-57 226.9 176 64.8
Nitab4.5_0006813g0020 Nicotiana tabacum HOM05D003401 ORTHO05D003906 1.4e-57 226.9 166 65.1
AUR62004010 Chenopodium quinoa HOM05D003401 ORTHO05D003906 1.8e-57 226.5 176 65.9
AUR62040237 Chenopodium quinoa HOM05D003401 ORTHO05D003906 1.8e-57 226.5 176 65.9
arahy.Tifrunner.gnm1.ann1.Q6V9VS Arachis hypogaea HOM05D003401 ORTHO05D003906 3.1e-57 225.7 172 59.9
Gorai.003G030500 Gossypium raimondii HOM05D003401 ORTHO05D003906 3.1e-57 225.7 175 62.3
PSO675G1608 Papaver somniferum HOM05D003401 ORTHO05D003906 3.1e-57 225.7 167 62.9
THA.LOC104827628 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 6.9e-57 224.6 172 64.0
Actinidia11982 Actinidia chinensis HOM05D003401 ORTHO05D003906 9.0e-57 224.2 135 79.3
Peaxi162Scf00118g01926 Petunia axillaris HOM05D003401 ORTHO05D003906 1.2e-56 223.8 177 59.9
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 1.5e-56 223.4 179 62.6
Aa31LG4G18330 Aethionema arabicum HOM05D003401 ORTHO05D003906 3.4e-56 222.2 173 63.6
Ah.03g140570 Amaranthus hybridus HOM05D003401 ORTHO05D003906 2.2e-55 219.5 172 62.2
Hund16401 Selenicereus undatus HOM05D003401 ORTHO05D003906 2.9e-55 219.2 179 63.7
ATR1153G046 Amborella trichopoda HOM05D003401 ORTHO05D003906 6.5e-55 218.0 176 59.1
PGSC0003DMG400009062 Solanum tuberosum HOM05D003401 ORTHO05D003906 8.4e-55 217.6 159 64.8
PGR102G3082 Punica granatum HOM05D003401 ORTHO05D003906 1.1e-54 217.2 176 61.9
PSO017G3176 Papaver somniferum HOM05D003401 ORTHO05D003906 1.4e-54 216.9 170 54.7
Sp5g12230 Schrenkiella parvula HOM05D003401 ORTHO05D003906 2.5e-54 216.1 169 60.9
CAN.G278.15 Capsicum annuum HOM05D003401 ORTHO05D003906 5.5e-54 214.9 185 60.5
Thhalv10010347m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 1.6e-53 213.4 172 61.0
PSO170G0024 Papaver somniferum HOM05D003401 ORTHO05D003906 1.6e-53 213.4 170 54.7
Ca_22105_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 2.7e-53 212.6 166 62.0
Sopen03g007790 Solanum pennellii HOM05D003401 ORTHO05D003906 2.3e-52 209.5 159 62.9
BcaB05g23171 Brassica carinata HOM05D003401 ORTHO05D003906 5.1e-52 208.4 166 59.6
Carub.0005s1624 Capsella rubella HOM05D003401 ORTHO05D003906 5.1e-52 208.4 171 60.8
SGA_v2.0_scaffold90G27720 Striga asiatica HOM05D003401 ORTHO05D003906 6.7e-52 208.0 168 58.3
BraA01t02353Z Brassica rapa HOM05D003401 ORTHO05D003906 1.5e-51 206.8 167 59.9
CsaV3_2G016740 Cucumis sativus L. HOM05D003401 ORTHO05D003906 3.3e-51 205.7 179 58.7
MELO3C020908.2 Cucumis melo HOM05D003401 ORTHO05D003906 5.7e-51 204.9 179 58.1
A01p24400 Brassica napus HOM05D003401 ORTHO05D003906 9.7e-51 204.1 168 58.9
SGA_v2.0_scaffold32G13360 Striga asiatica HOM05D003401 ORTHO05D003906 1.3e-50 203.8 170 57.6
A09p43030 Brassica napus HOM05D003401 ORTHO05D003906 1.6e-50 203.4 170 58.8
BraA09t39772Z Brassica rapa HOM05D003401 ORTHO05D003906 1.6e-50 203.4 170 58.8
AL5G29890 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 2.2e-50 203.0 170 58.2
AT3G49880 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 2.2e-50 203.0 171 59.1
Solyc03g043970.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 2.8e-50 202.6 159 60.4
BcaB01g00655 Brassica carinata HOM05D003401 ORTHO05D003906 6.3e-50 201.4 170 57.6
BcaC07g39454 Brassica carinata HOM05D003401 ORTHO05D003906 6.3e-50 201.4 170 58.2
C08p24910 Brassica napus HOM05D003401 ORTHO05D003906 6.3e-50 201.4 170 58.2
BolC8t50109H Brassica oleracea HOM05D003401 ORTHO05D003906 6.3e-50 201.4 170 58.2
CDE06G2486 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 8.2e-50 201.1 185 53.0
AL8G43760 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 1.1e-49 200.7 189 55.0
BcaC09g49981 Brassica carinata HOM05D003401 ORTHO05D003906 1.8e-49 199.9 166 57.8
C01p30420 Brassica napus HOM05D003401 ORTHO05D003906 1.8e-49 199.9 166 57.8
BolC1t02985H Brassica oleracea HOM05D003401 ORTHO05D003906 1.8e-49 199.9 166 57.8
Sc16g0002870 Simmondsia chinensis HOM05D003401 ORTHO05D003906 6.9e-49 198.0 113 81.4
AT5G67540 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 1.0e-47 194.1 188 53.7
Sp2g29110 Schrenkiella parvula HOM05D003401 ORTHO05D003906 1.3e-47 193.7 188 52.1
Carub.0008s2693 Capsella rubella HOM05D003401 ORTHO05D003906 1.7e-47 193.4 197 52.8
A06p32870 Brassica napus HOM05D003401 ORTHO05D003906 2.2e-47 193.0 197 52.8
BraA06t26219Z Brassica rapa HOM05D003401 ORTHO05D003906 2.2e-47 193.0 197 52.8
Aa31LG1G16090 Aethionema arabicum HOM05D003401 ORTHO05D003906 2.9e-47 192.6 177 54.2
CARHR158960 Cardamine hirsuta HOM05D003401 ORTHO05D003906 2.9e-47 192.6 176 57.4
Zm00001eb007800 Zea mays HOM05D003401 ORTHO05D003906 9.4e-46 187.6 172 50.0
Peaxi162Scf00016g10134 Petunia axillaris HOM05D003401 ORTHO05D003906 1.6e-45 186.8 177 54.8
Thhalv10004148m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 2.7e-45 186.0 179 52.5
C03p59600 Brassica napus HOM05D003401 ORTHO05D003906 3.6e-45 185.7 187 53.5
BolC3t18223H Brassica oleracea HOM05D003401 ORTHO05D003906 3.6e-45 185.7 187 53.5
SGA_v2.0_scaffold169G38738 Striga asiatica HOM05D003401 ORTHO05D003906 6.1e-45 184.9 133 63.9
CARHR280060 Cardamine hirsuta HOM05D003401 ORTHO05D003906 7.9e-45 184.5 182 53.3
Glyma.05G105700 Glycine max HOM05D003401 ORTHO05D003906 1.8e-44 183.3 177 53.1
Os12g0406100 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 6.7e-44 181.4 179 46.4
Zm00001eb400800 Zea mays HOM05D003401 ORTHO05D003906 2.0e-43 179.9 177 48.0
PSO541G4016 Papaver somniferum HOM05D003401 ORTHO05D003906 2.5e-43 179.5 127 64.6
TPR.G9942 Trifolium pratense HOM05D003401 ORTHO05D003906 5.7e-43 178.3 171 52.6
PGSC0003DMG400025929 Solanum tuberosum HOM05D003401 ORTHO05D003906 1.7e-42 176.8 177 52.5
Nitab4.5_0001401g0210 Nicotiana tabacum HOM05D003401 ORTHO05D003906 2.8e-42 176.0 179 50.8
Os01g0879400 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 8.2e-42 174.5 172 50.0
unitig_899.g14895 Utricularia gibba HOM05D003401 ORTHO05D003906 1.4e-41 173.7 113 69.0
Solyc01g109050.2 Solanum lycopersicum HOM05D003401 ORTHO05D003906 4.1e-41 172.2 177 51.4
Sopen01g051250 Solanum pennellii HOM05D003401 ORTHO05D003906 6.9e-41 171.4 177 51.4
Medtr4g097110 Medicago truncatula HOM05D003401 ORTHO05D003906 3.4e-40 169.1 179 52.5
TPR.G24262 Trifolium pratense HOM05D003401 ORTHO05D003906 3.4e-40 169.1 177 54.2
Cc02_g18210 Coffea canephora HOM05D003401 ORTHO05D003906 4.5e-40 168.7 178 51.7
CDE07G0805 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 2.2e-39 166.4 127 59.8
CAN.G322.85 Capsicum annuum HOM05D003401 ORTHO05D003906 2.9e-39 166.0 177 50.3
Nitab4.5_0008194g0090 Nicotiana tabacum HOM05D003401 ORTHO05D003906 8.8e-36 154.5 132 57.6
Gohir.D12G075700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 7.0e-33 144.8 69 87.0
CDE04G3602 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 9.1e-33 144.4 88 68.2
Psat0s4670g0040 Pisum sativum HOM05D003401 ORTHO05D003906 1.6e-32 143.7 179 49.7
Oeu054197.1 Olea europaea HOM05D003401 ORTHO05D003906 2.2e-31 139.8 69 82.6
Oeu000281.1 Olea europaea HOM05D003401 ORTHO05D003906 4.2e-30 135.6 165 45.5
SalBow6G5146 Salvia bowleyana HOM05D003401 ORTHO05D003906 3.3e-27 125.9 164 43.3
Migut.B00291 Erythranthe guttata HOM05D003401 ORTHO05D003906 7.5e-27 124.8 119 50.4
Gohir.A10G184500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.7e-26 123.6 145 47.6
Gorai.011G214500 Gossypium raimondii HOM05D003401 ORTHO05D003906 1.7e-26 123.6 145 47.6
Gohir.D10G191700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 8.2e-26 121.3 144 46.5
Pp3c24_13530 Physcomitrium patens HOM05D003401 ORTHO05D003906 7.0e-25 118.2 182 36.8
SalBow6G2088 Salvia bowleyana HOM05D003401 ORTHO05D003906 1.0e-23 114.4 181 43.1
Zm00001eb145850 Zea mays HOM05D003401 ORTHO05D003906 2.1e-21 106.7 68 64.7
BcaB02g09914 Brassica carinata HOM05D003401 ORTHO05D003906 6.8e-20 101.7 149 42.3
Mapoly0190s0009 Marchantia polymorpha HOM05D003401 ORTHO05D003906 2.0e-19 100.1 178 33.7
Nn1g04550 Nelumbo nucifera HOM05D003401 ORTHO05D003906 1.3e-18 97.4 67 64.2
SMO228G0195 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 3.7e-18 95.9 82 53.7
Pp3c24_11410 Physcomitrium patens HOM05D003401 ORTHO05D003906 4.5e-16 89.0 195 29.7
CBR_g103 Chara braunii HOM05D003401 ORTHO05D003906 3.8e-15 85.9 71 53.5
SMO203G0154 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 3.8e-15 85.9 79 49.4
CBR_g36888 Chara braunii HOM05D003401 ORTHO05D003906 5.2e-12 75.5 63 57.1
HPP92_024897 Vanilla planifolia HOM05D003401 ORTHO05D003906 8.8e-12 74.7 120 34.2


User provided reference genes

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