Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028306 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 2.9e-116 421.8 196 100.0
Nn082s42673 Nelumbo nucifera HOM05D000216 ORTHO05D000634 6.4e-71 271.2 148 85.8
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 8.3e-71 270.8 153 84.3
CAN.G2141.5 Capsicum annuum HOM05D000216 ORTHO05D000634 8.3e-71 270.8 148 85.8
CAN.G481.11 Capsicum annuum HOM05D000216 ORTHO05D000634 8.3e-71 270.8 148 85.8
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.4e-70 270.0 148 85.1
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 3.5e-69 265.4 150 84.7
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 3.5e-69 265.4 150 84.7
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 7.8e-69 264.2 120 98.3
Gorai.005G167700 Gossypium raimondii HOM05D000216 ORTHO05D001131 1.0e-68 263.8 148 83.1
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 1.3e-68 263.5 135 88.9
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 1.3e-68 263.5 135 88.9
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 3.9e-68 261.9 163 76.1
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 5.0e-68 261.5 120 96.7
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.1e-67 260.4 120 96.7
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.5e-67 260.0 120 95.8
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.9e-67 259.6 120 95.8
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 2.5e-67 259.2 148 83.1
MELO3C027102.2 Cucumis melo HOM05D000216 ORTHO05D000634 7.3e-67 257.7 120 95.8
Atru.chr13.1918 Acer truncatum HOM05D000216 ORTHO05D000634 9.5e-67 257.3 120 94.2
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 9.5e-67 257.3 148 81.8
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 2.1e-66 256.1 120 94.2
RcHm_v2.0_Chr2g0102161 Rosa chinensis HOM05D000216 ORTHO05D000634 3.6e-66 255.4 145 82.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.4e-65 253.4 154 78.6
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 93.3
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 93.3
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 93.3
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 93.3
BraSC140t45586Z Brassica rapa HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 93.3
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 93.3
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 92.5
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 3.1e-65 252.3 120 92.5
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 3.1e-65 252.3 120 92.5
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 6.8e-65 251.1 148 79.7
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 6.8e-65 251.1 148 79.7
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 6.8e-65 251.1 148 79.7
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 2.6e-64 249.2 119 93.3
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 5.8e-64 248.1 120 91.7
Psat7g026840 Pisum sativum HOM05D000216 ORTHO05D001131 5.8e-64 248.1 120 91.7
Lalb_Chr09g0335401 Lupinus albus HOM05D000216 ORTHO05D000634 1.7e-63 246.5 120 90.8
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-62 243.8 120 89.2
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-62 243.8 120 89.2
BraSC140t45599Z Brassica rapa HOM05D000216 ORTHO05D000634 1.6e-61 240.0 114 93.0
Lsat_1_v5_gn_1_118640 Lactuca sativa HOM05D000216 ORTHO05D000634 3.6e-58 228.8 149 75.2
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 4.7e-58 228.4 121 83.5
Lalb_Chr24g0400921 Lupinus albus HOM05D000216 ORTHO05D000634 8.7e-52 207.6 120 80.8
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 1.8e-49 199.9 120 79.2
Oeu062866.1 Olea europaea HOM05D000216 ORTHO05D000634 1.5e-43 180.3 106 80.2
Solyc12g035870.3 Solanum lycopersicum HOM05D000216 ORTHO05D001131 3.3e-43 179.1 94 81.9
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 7.3e-43 177.9 163 57.1
Solyc01g017370.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.8e-42 175.3 113 72.6
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 2.4e-41 172.9 86 89.5
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 3.9e-36 155.6 111 69.4
Migut.D01343 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.1e-34 149.8 107 66.4
Gohir.D13G173125 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.8e-34 148.7 78 83.3
ATR0227G001 Amborella trichopoda HOM05D000216 ORTHO05D001131 5.3e-33 145.2 93 74.2
arahy.Tifrunner.gnm1.ann1.F4653T Arachis hypogaea HOM05D000216 ORTHO05D000634 3.4e-32 142.5 76 82.9
SMO168G0002 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 9.9e-32 141.0 120 54.2
Potri.019G027860 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.7e-31 140.2 66 93.9
arahy.Tifrunner.gnm1.ann1.ITK2CB Arachis hypogaea HOM05D000388 ORTHO05D000473 1.9e-30 136.7 69 87.0
GSVIVG01000405001 Vitis vinifera HOM05D000216 ORTHO05D000634 5.5e-30 135.2 67 89.6
Gorai.008G086500 Gossypium raimondii HOM05D000216 ORTHO05D001131 1.0e-28 131.0 68 85.3
Gorai.013G187400 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.0e-28 129.4 65 86.2
SMO086G0006 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 8.7e-28 127.9 138 46.4
CARHR181340 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.1e-27 127.5 66 83.3
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 1.5e-27 127.1 62 90.3
Gorai.009G384300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.9e-27 126.7 74 75.7
HanXRQChr00c0994g0578191 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-25 120.6 53 96.2
C02p28760 Brassica napus HOM05D000216 ORTHO05D000634 4.0e-25 119.0 62 80.6
Mapoly0093s0044 Marchantia polymorpha HOM05D000216 ORTHO05D000634 4.0e-25 119.0 77 70.1
Migut.D01416 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.5e-24 117.1 57 89.5
Mapoly0093s0045 Marchantia polymorpha HOM05D000216 ORTHO05D000634 2.6e-24 116.3 76 68.4
Gorai.004G101400 Gossypium raimondii HOM05D000216 ORTHO05D001131 3.4e-24 115.9 77 74.0
Migut.K00995 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.5e-22 109.8 64 76.6
Pp3c19_12990 Physcomitrium patens HOM05D000216 ORTHO05D000634 4.2e-22 109.0 82 63.4
Gohir.D08G095620 Gossypium hirsutum HOM05D000216 ORTHO05D001131 7.1e-22 108.2 77 70.1
Solyc07g021205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.1e-22 108.2 72 70.8
FAN17G2339 Fragaria x ananassa HOM05D000216 ORTHO05D000634 1.0e-20 104.4 49 95.9
Gorai.008G192200 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.3e-18 97.4 56 76.8
Gohir.D12G179260 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.1e-17 94.4 64 67.2
Oeu054668.1 Olea europaea HOM05D000445 ORTHO05D000634 9.0e-17 91.3 42 90.5
Solyc12g062560.1 Solanum lycopersicum HOM05D001133 ORTHO05D000941 5.0e-15 85.5 77 53.2
Medtr8g018880 Medicago truncatula HOM05D000216 ORTHO05D000634 8.5e-15 84.7 46 82.6
BolSC49t61197H Brassica oleracea HOM05D000216 ORTHO05D000634 3.2e-14 82.8 53 71.7
BolC7t41733H Brassica oleracea HOM05D000216 ORTHO05D000634 1.2e-13 80.9 38 92.1
Solyc07g021200.1 Solanum lycopersicum HOM05D001133 ORTHO05D000941 1.4e-12 77.4 41 80.5
Hund21335 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-11 73.6 38 84.2
Solyc12g062563.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.0e-11 73.6 73 53.4
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.9e-08 62.0 49 63.3
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.9e-08 62.0 49 63.3
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.9e-08 62.0 49 63.3
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 7.7e-08 61.6 34 88.2
Ah.05g176830 Amaranthus hybridus HOM05D000216 ORTHO05D001131 2.5e-06 56.6 33 81.8


User provided reference genes

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