Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 3.0e-50 201.4 96 100.0
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 9.5e-28 126.7 78 78.2
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 3.6e-27 124.8 78 75.6
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.1e-26 123.2 78 73.1
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.3e-26 122.1 78 71.8
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 2.3e-26 122.1 90 70.0
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 3.1e-26 121.7 78 71.8
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 4.0e-26 121.3 78 70.5
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 4.0e-26 121.3 75 76.0
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 4.0e-26 121.3 78 71.8
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 5.2e-26 120.9 78 74.4
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 5.2e-26 120.9 78 71.8
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 5.2e-26 120.9 78 73.1
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 6.8e-26 120.6 78 70.5
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 6.8e-26 120.6 78 73.1
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 8.9e-26 120.2 75 77.3
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 8.9e-26 120.2 78 70.5
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 1.2e-25 119.8 78 70.5
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 1.2e-25 119.8 78 70.5
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.2e-25 119.8 75 76.0
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 1.2e-25 119.8 75 74.7
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 1.5e-25 119.4 78 70.5
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 2.6e-25 118.6 75 73.3
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 2.6e-25 118.6 75 73.3
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 3.4e-25 118.2 75 73.3
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 3.4e-25 118.2 78 69.2
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 3.4e-25 118.2 78 69.2
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 4.4e-25 117.9 75 73.3
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 5.8e-25 117.5 78 70.5
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 7.5e-25 117.1 78 70.5
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 7.5e-25 117.1 75 73.3
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 7.5e-25 117.1 78 66.7
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 9.8e-25 116.7 75 72.0
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.3e-24 116.3 74 75.7
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 1.3e-24 116.3 75 72.0
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.7e-24 115.9 78 70.5
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 2.9e-24 115.2 75 72.0
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 2.9e-24 115.2 78 70.5
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 3.7e-24 114.8 75 70.7
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 3.7e-24 114.8 75 72.0
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 3.7e-24 114.8 78 69.2
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 3.7e-24 114.8 78 69.2
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 3.7e-24 114.8 78 69.2
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 3.7e-24 114.8 78 69.2
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 4.9e-24 114.4 78 67.9
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 4.9e-24 114.4 78 69.2
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 4.9e-24 114.4 75 72.0
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 6.4e-24 114.0 78 67.9
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 8.3e-24 113.6 78 69.2
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 8.3e-24 113.6 78 67.9
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 8.3e-24 113.6 78 67.9
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 8.3e-24 113.6 75 69.3
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 8.3e-24 113.6 75 70.7
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.1e-23 113.2 75 70.7
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 66.7
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 67.9
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 1.1e-23 113.2 87 60.9
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 67.9
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 67.9
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 67.9
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 67.9
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 1.1e-23 113.2 75 70.7
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 1.1e-23 113.2 78 67.9
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 1.4e-23 112.8 75 68.0
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.9e-23 112.5 75 68.0
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.9e-23 112.5 78 71.8
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.9e-23 112.5 75 68.0
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 1.9e-23 112.5 75 69.3
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 2.4e-23 112.1 78 67.9
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 2.4e-23 112.1 74 70.3
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 2.4e-23 112.1 75 68.0
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 2.4e-23 112.1 75 68.0
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 2.4e-23 112.1 81 65.4
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 2.4e-23 112.1 78 66.7
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 2.4e-23 112.1 75 68.0
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.2e-23 111.7 79 65.8
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 3.2e-23 111.7 78 66.7
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 3.2e-23 111.7 75 70.7
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 4.1e-23 111.3 78 67.9
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 4.1e-23 111.3 78 69.2
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 4.1e-23 111.3 78 67.9
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 4.1e-23 111.3 78 67.9
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 4.1e-23 111.3 78 67.9
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 5.4e-23 110.9 78 66.7
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 5.4e-23 110.9 75 66.7
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 5.4e-23 110.9 75 66.7
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 5.4e-23 110.9 75 66.7
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 5.4e-23 110.9 78 66.7
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 7.1e-23 110.5 76 65.8
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 7.1e-23 110.5 78 66.7
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 7.1e-23 110.5 78 66.7
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 7.1e-23 110.5 75 66.7
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 7.1e-23 110.5 78 66.7
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 9.2e-23 110.2 78 66.7
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 9.2e-23 110.2 76 67.1
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 9.2e-23 110.2 75 68.0
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 9.2e-23 110.2 75 68.0
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 9.2e-23 110.2 79 65.8
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.6e-22 109.4 75 66.7
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 2.1e-22 109.0 76 65.8
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.7e-22 108.6 75 66.7
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 3.5e-22 108.2 75 68.0
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 3.5e-22 108.2 76 64.5
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 4.6e-22 107.8 75 68.0
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 4.6e-22 107.8 75 66.7
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 4.6e-22 107.8 76 64.5
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 4.6e-22 107.8 76 64.5
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 4.6e-22 107.8 76 64.5
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 4.6e-22 107.8 76 65.8
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 4.6e-22 107.8 78 64.1
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 6.0e-22 107.5 75 66.7
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 6.0e-22 107.5 75 66.7
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 7.8e-22 107.1 78 64.1
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 1.0e-21 106.7 76 63.2
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.0e-21 106.7 76 63.2
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 1.0e-21 106.7 76 63.2
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 1.7e-21 105.9 78 62.8
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 1.7e-21 105.9 76 65.8
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.3e-21 105.5 76 63.2
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 5.1e-21 104.4 104 54.8
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.6e-21 104.0 76 64.5
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 8.6e-21 103.6 76 61.8
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 8.6e-21 103.6 75 64.0
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 1.9e-20 102.4 75 64.0
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 1.9e-20 102.4 75 64.0
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 2.5e-20 102.1 75 64.0
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.5e-20 102.1 75 64.0
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.3e-20 101.3 78 61.5
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.3e-20 101.3 78 61.5
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 4.3e-20 101.3 76 61.8
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 5.6e-20 100.9 75 62.7
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 5.6e-20 100.9 75 62.7
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 2.1e-19 99.0 75 62.7
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 4.7e-19 97.8 72 63.9
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 6.2e-19 97.4 76 57.9
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 1.2e-17 93.2 76 60.5
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 7.6e-17 90.5 89 56.2
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.3e-16 89.7 78 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 2.9e-16 88.6 74 58.1
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 1.9e-15 85.9 66 62.1
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 1.6e-14 82.8 78 51.3
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 6.6e-13 77.4 78 52.6
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 2.5e-12 75.5 76 51.3
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.8e-11 72.0 76 47.4
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 1.5e-09 66.2 42 66.7
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 3.8e-08 61.6 78 44.9
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 7.8e-06 53.9 65 47.7


User provided reference genes

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