Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.2e-33 142.9 69 100.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 5.4e-09 63.9 33 93.9
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.2e-08 62.8 33 90.9
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.6e-08 62.4 33 90.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.1e-08 62.0 32 93.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 2.7e-08 61.6 32 93.8
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.5e-08 61.2 32 90.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 3.5e-08 61.2 37 75.7
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 3.5e-08 61.2 32 90.6
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 3.5e-08 61.2 32 90.6
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 4.6e-08 60.8 33 87.9
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 4.6e-08 60.8 32 90.6
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.0e-08 60.5 32 90.6
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 6.0e-08 60.5 32 87.5
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 6.0e-08 60.5 32 90.6
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 6.0e-08 60.5 32 90.6
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 6.0e-08 60.5 32 90.6
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 6.0e-08 60.5 32 90.6
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 7.9e-08 60.1 32 90.6
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.0e-07 59.7 30 93.3
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.0e-07 59.7 32 87.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.0e-07 59.7 32 87.5
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.0e-07 59.7 32 87.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.0e-07 59.7 32 87.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.0e-07 59.7 32 87.5
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.0e-07 59.7 32 87.5
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.3e-07 59.3 32 87.5
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.3e-07 59.3 32 87.5
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.3e-07 59.3 32 87.5
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.8e-07 58.9 32 87.5
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.8e-07 58.9 32 87.5
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 2.3e-07 58.5 33 84.8
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-07 58.5 33 84.8
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 84.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.3e-07 58.5 32 87.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 84.4
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 87.5
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 3.0e-07 58.2 32 84.4
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.9e-07 57.8 32 84.4
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 3.9e-07 57.8 32 84.4
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.9e-07 57.8 32 84.4
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 3.9e-07 57.8 32 84.4
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 5.1e-07 57.4 32 84.4
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 5.1e-07 57.4 32 84.4
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 5.1e-07 57.4 32 84.4
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 5.1e-07 57.4 32 84.4
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 5.1e-07 57.4 32 84.4
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 6.7e-07 57.0 32 84.4
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 6.7e-07 57.0 32 81.2
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.7e-07 57.0 32 81.2
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 8.7e-07 56.6 32 81.2
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 8.7e-07 56.6 32 87.5
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 8.7e-07 56.6 32 87.5
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 8.7e-07 56.6 32 81.2
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.5e-06 55.8 32 84.4
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 2.5e-06 55.1 33 75.8
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 4.3e-06 54.3 30 86.7
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 5.6e-06 53.9 32 81.2


User provided reference genes

Program Settings