Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026699 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.2e-83 313.2 162 100.0
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.2e-48 196.1 154 74.7
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.5e-41 173.3 139 73.4
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 7.4e-41 171.0 140 68.6
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 5.3e-39 164.9 139 69.1
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 6.9e-39 164.5 155 62.6
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 6.9e-39 164.5 137 68.6
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 9.1e-39 164.1 136 67.6
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 1.5e-38 163.3 139 66.2
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 1.5e-38 163.3 151 63.6
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 4.5e-38 161.8 140 65.7
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 5.5e-36 154.8 140 64.3
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 7.2e-36 154.5 140 65.0
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 1.2e-35 153.7 139 64.0
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.2e-35 153.7 141 63.8
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 1.6e-35 153.3 140 64.3
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 1.6e-35 153.3 139 64.7
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 1.6e-35 153.3 139 63.3
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 2.7e-35 152.5 139 64.0
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 2.7e-35 152.5 139 64.7
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 6.1e-35 151.4 137 64.2
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 1.0e-34 150.6 138 61.6
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.4e-34 150.2 140 62.1
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 2.3e-34 149.4 139 59.7
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 2.3e-34 149.4 139 63.3
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 3.9e-34 148.7 139 62.6
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 6.7e-34 147.9 140 62.1
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.1e-33 147.1 137 62.8
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 2.0e-33 146.4 139 60.4
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 2.0e-33 146.4 139 61.9
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 3.3e-33 145.6 102 78.4
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 3.3e-33 145.6 139 59.7
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 3.3e-33 145.6 140 61.4
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 7.4e-33 144.4 140 61.4
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 7.4e-33 144.4 140 62.1
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 7.4e-33 144.4 141 58.9
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 7.4e-33 144.4 140 59.3
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 9.7e-33 144.1 139 61.9
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 2.2e-32 142.9 140 60.0
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 2.8e-32 142.5 140 61.4
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 2.8e-32 142.5 139 59.0
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 3.7e-32 142.1 139 60.4
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 3.7e-32 142.1 139 59.0
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 3.7e-32 142.1 140 60.7
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 3.7e-32 142.1 139 61.9
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.8e-32 141.7 139 59.7
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.8e-32 141.7 139 59.0
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 4.8e-32 141.7 140 57.9
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 4.8e-32 141.7 140 60.7
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 4.8e-32 141.7 139 59.0
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 6.3e-32 141.4 140 60.0
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 8.2e-32 141.0 102 74.5
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 8.2e-32 141.0 140 59.3
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 8.2e-32 141.0 142 59.9
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 1.1e-31 140.6 140 59.3
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 1.4e-31 140.2 140 58.6
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.4e-31 140.2 139 61.2
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.4e-31 140.2 140 61.4
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 1.4e-31 140.2 140 60.0
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.4e-31 140.2 140 60.0
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 1.4e-31 140.2 141 58.2
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.8e-31 139.8 140 59.3
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.8e-31 139.8 139 60.4
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.8e-31 139.8 139 59.7
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 2.4e-31 139.4 136 58.1
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 2.4e-31 139.4 141 56.0
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 5.3e-31 138.3 137 56.9
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 5.3e-31 138.3 137 59.9
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 5.3e-31 138.3 137 59.9
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 7.0e-31 137.9 139 60.4
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 7.0e-31 137.9 139 59.7
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 7.0e-31 137.9 136 58.8
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 9.1e-31 137.5 140 59.3
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 1.6e-30 136.7 140 58.6
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 1.6e-30 136.7 141 58.9
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 1.6e-30 136.7 140 57.9
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 2.0e-30 136.3 139 58.3
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.6e-30 136.0 131 61.8
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 3.5e-30 135.6 140 59.3
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 4.5e-30 135.2 140 59.3
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 1.7e-29 133.3 136 57.4
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 1.7e-29 133.3 138 58.0
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 2.2e-29 132.9 140 57.1
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 2.2e-29 132.9 141 58.9
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 5.0e-29 131.7 116 63.8
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 1.1e-28 130.6 136 54.4
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 1.1e-28 130.6 139 55.4
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 1.1e-28 130.6 154 51.3
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 1.5e-28 130.2 136 53.7
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 1.5e-28 130.2 121 62.0
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 1.9e-28 129.8 136 54.4
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 5.5e-28 128.3 99 67.7
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 7.2e-28 127.9 136 55.1
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 9.4e-28 127.5 141 56.0
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 9.4e-28 127.5 99 66.7
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 1.2e-27 127.1 99 67.7
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 1.2e-27 127.1 105 66.7
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 1.6e-27 126.7 138 55.8
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 1.6e-27 126.7 140 55.0
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 2.7e-27 125.9 97 68.0
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 4.7e-27 125.2 140 56.4
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 8.0e-27 124.4 99 65.7
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.0e-26 124.0 141 57.4
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 5.2e-26 121.7 135 54.1
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 6.7e-26 121.3 136 49.3
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 8.8e-26 120.9 135 52.6
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 3.3e-25 119.0 137 53.3
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 3.3e-25 119.0 133 53.4
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.4e-25 118.6 139 54.7
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 4.4e-25 118.6 135 53.3
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 7.5e-25 117.9 137 50.4
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 9.7e-25 117.5 112 56.2
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 1.3e-24 117.1 135 51.1
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 2.2e-24 116.3 102 63.7
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 2.8e-24 115.9 135 49.6
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 8.2e-24 114.4 134 52.2
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 8.2e-24 114.4 134 52.2
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 8.2e-24 114.4 134 52.2
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 8.2e-24 114.4 134 52.2
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 8.2e-24 114.4 134 52.2
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 8.2e-24 114.4 134 52.2
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.1e-23 114.0 100 68.0
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 1.1e-23 114.0 138 47.8
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 2.4e-23 112.8 134 51.5
BcaC09g49432 Brassica carinata HOM05D004387 ORTHO05D005218 4.5e-22 108.6 121 52.9
C01p36790 Brassica napus HOM05D004387 ORTHO05D005218 1.3e-21 107.1 105 59.0
BolC1t03637H Brassica oleracea HOM05D004387 ORTHO05D005218 1.3e-21 107.1 105 59.0
SEGI_27972 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 8.5e-21 104.4 152 42.8
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 1.6e-19 100.1 140 45.0
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 3.6e-19 99.0 138 46.4
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 3.0e-18 95.9 150 41.3
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 2.6e-17 92.8 75 65.3
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 2.2e-13 79.7 139 41.0
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.6e-11 72.4 139 40.3
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 4.7e-11 72.0 57 66.7
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 6.1e-11 71.6 82 56.1
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 6.1e-11 71.6 108 35.2
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 8.0e-11 71.2 55 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 1.8e-10 70.1 117 34.2
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 4.9e-08 62.0 122 45.1
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 4.9e-08 62.0 132 28.8


User provided reference genes

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