Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026449 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 1.3e-44 182.6 88 100.0
CSS0032901 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 1.3e-44 182.6 88 100.0
CSS0045789 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 1.8e-36 155.6 89 87.6
Gohir.A06G188300 Gossypium hirsutum HOM05D001537 ORTHO05D002595 4.8e-10 67.8 68 54.4
Gorai.010G228200 Gossypium raimondii HOM05D001537 ORTHO05D002595 4.8e-10 67.8 68 54.4
Duzib235G1517 Durio zibethinus HOM05D001537 ORTHO05D002595 1.8e-09 65.9 62 54.8
CSS0046248 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 5.3e-09 64.3 30 96.7
MBI04_g10462_MAGBIO Magnolia biondii HOM05D001537 ORTHO05D002595 5.3e-09 64.3 30 96.7
Potri.001G180200 Populus trichocarpa HOM05D001537 ORTHO05D002595 5.3e-09 64.3 30 96.7
TAR636G3516 Trochodendron aralioides HOM05D001537 ORTHO05D002595 6.9e-09 63.9 30 93.3
Gohir.D06G194400 Gossypium hirsutum HOM05D001537 ORTHO05D002595 9.1e-09 63.5 68 52.9
COL.COLO4_30371 Corchorus olitorius HOM05D001537 ORTHO05D002595 1.5e-08 62.8 62 53.2
GSVIVG01017108001 Vitis vinifera HOM05D001537 ORTHO05D002595 1.5e-08 62.8 30 93.3
Thecc.06G087400 Theobroma cacao HOM05D001537 ORTHO05D002595 2.0e-08 62.4 62 53.2
CiPaw.01G239300 Carya illinoinensis HOM05D001537 ORTHO05D002595 2.6e-08 62.0 30 93.3
MELO3C024231.2 Cucumis melo HOM05D001537 ORTHO05D002595 2.6e-08 62.0 53 52.8
PGR102G0923 Punica granatum HOM05D001537 ORTHO05D002595 2.6e-08 62.0 43 72.1
Actinidia08978 Actinidia chinensis HOM05D001537 ORTHO05D002595 3.4e-08 61.6 59 55.9
Nn8g39217 Nelumbo nucifera HOM05D001537 ORTHO05D002595 4.5e-08 61.2 30 86.7
Cfa002066 Carpinus fangiana HOM05D001537 ORTHO05D002595 5.9e-08 60.8 59 50.8
Rhsim08G0221300 Rhododendron simsii HOM05D001537 ORTHO05D002595 5.9e-08 60.8 29 93.1
Cc04_g03430 Coffea canephora HOM05D001537 ORTHO05D002595 7.7e-08 60.5 30 90.0
Haze_16429 Corylus avellana HOM05D001537 ORTHO05D002595 7.7e-08 60.5 59 50.8
Dinv30509 Davidia involucrata HOM05D001537 ORTHO05D002595 7.7e-08 60.5 30 90.0
Oeu063977.2 Olea europaea HOM05D001537 ORTHO05D002595 7.7e-08 60.5 30 90.0
vmacro18913 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 7.7e-08 60.5 30 90.0
SHI10918 Sapria himalayana HOM05D001537 ORTHO05D002595 1.0e-07 60.1 52 55.8
ClCG09G002140 Citrullus lanatus HOM05D001537 ORTHO05D002595 1.3e-07 59.7 30 86.7
Ciclev10024801m.g Citrus clementina HOM05D001537 ORTHO05D002595 1.3e-07 59.7 30 90.0
CsaV3_7G033170 Cucumis sativus L. HOM05D001537 ORTHO05D002595 1.3e-07 59.7 30 86.7
Sed0016827 Sechium edule HOM05D001537 ORTHO05D002595 1.3e-07 59.7 30 86.7
HPP92_022952 Vanilla planifolia HOM05D001537 ORTHO05D002595 1.3e-07 59.7 30 86.7
Nitab4.5_0005851g0070 Nicotiana tabacum HOM05D001537 ORTHO05D002595 1.7e-07 59.3 30 86.7
MD17G1195000 Malus domestica HOM05D001537 ORTHO05D002595 2.2e-07 58.9 30 86.7
Nitab4.5_0000671g0080 Nicotiana tabacum HOM05D001537 ORTHO05D002595 2.2e-07 58.9 30 86.7
Prupe.3G071000 Prunus persica HOM05D001537 ORTHO05D002595 2.2e-07 58.9 30 86.7
Solyc03g120200.2 Solanum lycopersicum HOM05D001537 ORTHO05D002595 2.2e-07 58.9 30 86.7
Sopen03g039070 Solanum pennellii HOM05D001537 ORTHO05D002595 2.2e-07 58.9 30 86.7
Ca_01115_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 2.9e-07 58.5 30 86.7
Glyma.13G359400 Glycine max HOM05D001537 ORTHO05D002595 2.9e-07 58.5 30 86.7
Lj3g0003193 Lotus japonicus HOM05D001537 ORTHO05D002595 2.9e-07 58.5 30 86.7
Phvul.005G171300 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 2.9e-07 58.5 30 86.7
Sc21g0005110 Simmondsia chinensis HOM05D001537 ORTHO05D002595 2.9e-07 58.5 30 83.3
VMungo1080G0222 Vigna mungo HOM05D001537 ORTHO05D002595 2.9e-07 58.5 30 86.7
CSS0039897 Camellia sinensis var. sinensis HOM05D001537 ORTHO05D002595 3.8e-07 58.2 29 89.7
Cpa.g.sc711.4 Carica papaya HOM05D001537 ORTHO05D002595 3.8e-07 58.2 29 89.7
Lj5A60G63 Lonicera japonica HOM05D001537 ORTHO05D002595 3.8e-07 58.2 30 83.3
PSO210G2103 Papaver somniferum HOM05D001537 ORTHO05D002595 3.8e-07 58.2 30 83.3
RcHm_v2.0_Chr2g0137871 Rosa chinensis HOM05D001537 ORTHO05D002595 3.8e-07 58.2 30 83.3
TPR.G37206 Trifolium pratense HOM05D001537 ORTHO05D002595 3.8e-07 58.2 30 83.3
Peaxi162Scf00015g00339 Petunia axillaris HOM05D001537 ORTHO05D002595 5.0e-07 57.8 30 83.3
SalBow2G3154 Salvia bowleyana HOM05D001537 ORTHO05D002595 5.0e-07 57.8 30 86.7
SMO364G0359 Selaginella moellendorffii HOM05D001537 ORTHO05D002595 5.0e-07 57.8 30 80.0
AagrBONN_evm.TU.Sc2ySwM_117.2492 Anthoceros agrestis HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 80.0
arahy.Tifrunner.gnm1.ann1.I8FNU5 Arachis hypogaea HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 83.3
arahy.Tifrunner.gnm1.ann1.YVS4XZ Arachis hypogaea HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 83.3
Eucgr.F03013 Eucalyptus grandis HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 83.3
Lsat_1_v5_gn_4_103661 Lactuca sativa HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 80.0
Mapoly0076s0066 Marchantia polymorpha HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 80.0
TPR.G37208 Trifolium pratense HOM05D001537 ORTHO05D002595 8.5e-07 57.0 30 80.0
CAN.G438.67 Capsicum annuum HOM05D001537 ORTHO05D002595 1.1e-06 56.6 30 83.3
DCAR_016222 Daucus carota HOM05D001537 ORTHO05D002595 1.1e-06 56.6 30 83.3
PSO210G1376 Papaver somniferum HOM05D001537 ORTHO05D002595 1.1e-06 56.6 30 80.0
MSTRG.11077 Avicennia marina HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 83.3
AUR62011630 Chenopodium quinoa HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 80.0
FvH4_6g31180 Fragaria vesca HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 80.0
FAN05G3427 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 80.0
FAN14G4499 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 80.0
Manes.11G047500 Manihot esculenta HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 83.3
Medtr2g102150 Medicago truncatula HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 80.0
Psat5g298960 Pisum sativum HOM05D001537 ORTHO05D002595 1.4e-06 56.2 30 83.3
QL05p024197 Quercus lobata HOM05D001537 ORTHO05D002595 1.4e-06 56.2 59 50.8
Atru.chr1.3271 Acer truncatum HOM05D001537 ORTHO05D002595 1.9e-06 55.8 30 83.3
ATR1120G122 Amborella trichopoda HOM05D001537 ORTHO05D002595 1.9e-06 55.8 30 80.0
AUR62016445 Chenopodium quinoa HOM05D001537 ORTHO05D002595 1.9e-06 55.8 30 76.7
SEGI_16890 Sequoiadendron giganteum HOM05D001537 ORTHO05D002595 1.9e-06 55.8 30 76.7
Aqoxy7G03786 Aquilegia oxysepala HOM05D001537 ORTHO05D002595 2.5e-06 55.5 30 83.3
CANSAT56G0841 Cannabis sativa HOM05D001537 ORTHO05D002595 2.5e-06 55.5 36 66.7
TWI12G1035 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 2.5e-06 55.5 30 83.3
EL10Ac9g22000 Beta vulgaris HOM05D001537 ORTHO05D002595 4.2e-06 54.7 30 76.7
Hma1.2p1_0682F.1_g202780 Hydrangea macrophylla HOM05D001537 ORTHO05D002595 4.2e-06 54.7 30 83.3
Pp3c18_12550 Physcomitrium patens HOM05D001537 ORTHO05D002595 4.2e-06 54.7 30 76.7
SGA_v2.0_scaffold37G14822 Striga asiatica HOM05D001537 ORTHO05D002595 4.2e-06 54.7 30 76.7
Ah.01g021390 Amaranthus hybridus HOM05D001537 ORTHO05D002595 5.5e-06 54.3 30 80.0
Migut.I00865 Erythranthe guttata HOM05D001537 ORTHO05D002595 5.5e-06 54.3 30 80.0
unitig_62.g23603 Utricularia gibba HOM05D001537 ORTHO05D002595 7.2e-06 53.9 30 76.7
BcaC08g45278 Brassica carinata HOM05D001537 ORTHO05D002595 9.4e-06 53.5 34 73.5
CAN.G41.6 Capsicum annuum HOM05D001537 ORTHO05D002006 9.4e-06 53.5 35 71.4
Lalb_Chr22g0351281 Lupinus albus HOM05D001537 ORTHO05D002595 9.4e-06 53.5 30 80.0


User provided reference genes

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