Gene: Solyc03g120200.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g120200.2
  • Transcript Identifier Solyc03g120200.2.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 63095977-63109633 : negative

Gene Family Information

  • ID HOM05D001537
  • #Genes/#Species 414/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g120200.2.1
  • uniprot A0A3Q7GK99
  • gene_id Solyc03g120200

Descriptions

  • Description RNA helicase DEAH-box11
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G79950
GO:0090657
IBA
GOA Databasetelomeric loop disassembly
GO:0045910
IBA
GOA Databasenegative regulation of DNA recombination
GO:0010569
IBA
GOA Databaseregulation of double-strand break repair via homologous recombination
GO:0032508
IBA
GOA DatabaseDNA duplex unwinding
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G79950
GO:1904430
IBA
GOA Databasenegative regulation of t-circle formation
GO:0070716
ISO
PLAZA Integrative Orthologymismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication AT1G79950
GO:0006260
ISO
PLAZA Integrative OrthologyDNA replication AT1G79950
GO:0036297
ISO
PLAZA Integrative Orthologyinterstrand cross-link repair AT1G79950
GO:0000725
ISO
PLAZA Integrative Orthologyrecombinational repair AT1G79950
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT1G79950
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT1G79950
GO:0000723
ISO
PLAZA Integrative Orthologytelomere maintenance AT1G79950
GO:0043007
ISO
PLAZA Integrative Orthologymaintenance of rDNA AT1G79950
GO:0016070
IDA
Gene OntologyRNA metabolic process1
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070182
IBA
GOA DatabaseDNA polymerase binding
GO:0003678
IBA
IEA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity
GO:0005524
IBA
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003724
IDA
Gene OntologyRNA helicase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G79950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR010614 DEAD2
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
IPR006555 ATP-dependent helicase, C-terminal
IPR006554 Helicase-like, DEXD box c2 type
IPR013020 ATP-dependent helicase Rad3/Chl1-like
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
13.1.2.6 Cell cycle organisation.cell cycle control.regulation.regulatory helicase (RTEL)