Gene: Sopen03g039070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g039070
  • Transcript Identifier Sopen03g039070.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 73238236-73252487 : negative

Gene Family Information

  • ID HOM05D001537
  • #Genes/#Species 414/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g039070.1

Descriptions

  • Description RAD3-like DNA-binding helicase protein | FUNCTIONS IN: in 6 functions | INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | LOCATED IN: mitochondrion | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: DEAD2 , DEAD-like helicase, N-terminal , Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type , Helicase-like, DEXD box c2 type , DNA helicase (DNA repair), Rad3 type , Helicase, ATP-dependent, c2 type , Paired amphipathic helix | BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000725
ISO
PLAZA Integrative Orthologyrecombinational repair AT1G79950
GO:0010569
ISO
PLAZA Integrative Orthologyregulation of double-strand break repair via homologous recombination AT1G79950
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g120200.2
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G79950
GO:0045910
ISO
PLAZA Integrative Orthologynegative regulation of DNA recombination AT1G79950
GO:0043007
ISO
PLAZA Integrative Orthologymaintenance of rDNA AT1G79950
GO:0000723
ISO
PLAZA Integrative Orthologytelomere maintenance AT1G79950
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT1G79950
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT1G79950
GO:0036297
ISO
PLAZA Integrative Orthologyinterstrand cross-link repair AT1G79950
GO:0006260
ISO
PLAZA Integrative OrthologyDNA replication AT1G79950
GO:0070716
ISO
PLAZA Integrative Orthologymismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication AT1G79950
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G79950
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc03g120200.2
GO:0003677
IEA
InterProDNA binding
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0004386
IEA
InterProhelicase activity
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003678
IEA
InterProDNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G79950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010614 DEAD2
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
IPR006555 ATP-dependent helicase, C-terminal
IPR006554 Helicase-like, DEXD box c2 type
IPR013020 ATP-dependent helicase Rad3/Chl1-like
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
13.1.2.6 Cell cycle organisation.cell cycle control.regulation.regulatory helicase (RTEL)