Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 4.7e-166 587.8 298 100.0
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 2.8e-134 482.3 308 81.5
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 4.7e-134 481.5 309 83.2
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 8.3e-131 470.7 312 81.4
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.0e-128 463.8 276 84.4
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 3.0e-128 462.2 230 95.2
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 3.0e-128 462.2 230 95.2
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 3.9e-128 461.8 298 80.9
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 5.1e-128 461.5 261 85.8
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 6.6e-128 461.1 236 93.2
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 6.6e-128 461.1 236 92.4
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 6.6e-128 461.1 288 79.9
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 1.1e-127 460.3 236 92.8
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.9e-127 459.5 275 83.6
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 1.9e-127 459.5 263 85.9
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 3.3e-127 458.8 232 94.0
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 3.3e-127 458.8 230 93.5
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 3.3e-127 458.8 228 94.7
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 9.5e-127 457.2 229 94.3
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 9.5e-127 457.2 250 89.2
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 2.1e-126 456.1 272 82.0
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 2.1e-126 456.1 236 92.4
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 3.6e-126 455.3 284 79.9
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 4.7e-126 454.9 264 84.5
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 8.1e-126 454.1 306 76.8
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 8.1e-126 454.1 295 77.6
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 1.1e-125 453.8 295 78.6
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 1.1e-125 453.8 245 88.2
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 1.8e-125 453.0 236 91.9
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 1.8e-125 453.0 294 77.9
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 2.3e-125 452.6 285 81.1
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 2.3e-125 452.6 227 93.8
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 3.1e-125 452.2 287 78.7
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 3.1e-125 452.2 288 79.5
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 3.1e-125 452.2 290 79.3
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 3.1e-125 452.2 296 79.1
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 4.0e-125 451.8 232 91.8
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 4.0e-125 451.8 294 78.6
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 4.0e-125 451.8 294 77.9
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 5.2e-125 451.4 236 90.3
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 5.2e-125 451.4 296 79.1
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 6.8e-125 451.1 296 78.0
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 2.0e-124 449.5 251 86.1
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 3.4e-124 448.7 298 76.2
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 4.4e-124 448.4 236 89.8
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 4.4e-124 448.4 232 91.8
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 4.4e-124 448.4 295 79.7
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 5.8e-124 448.0 236 89.8
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 7.6e-124 447.6 253 84.2
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 1.3e-123 446.8 277 78.7
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 1.3e-123 446.8 246 87.4
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 1.7e-123 446.4 304 77.3
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 1.7e-123 446.4 299 79.6
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 2.9e-123 445.7 230 92.2
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 2.9e-123 445.7 299 75.6
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 4.9e-123 444.9 245 86.9
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 6.4e-123 444.5 262 83.6
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 6.4e-123 444.5 274 81.4
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 8.4e-123 444.1 280 79.3
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 1.1e-122 443.7 289 79.2
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.4e-122 443.4 289 79.2
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 1.9e-122 443.0 230 90.0
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 2.4e-122 442.6 229 90.8
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 4.1e-122 441.8 288 79.5
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 4.1e-122 441.8 251 85.3
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 5.4e-122 441.4 275 80.7
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 7.1e-122 441.0 306 76.5
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 7.1e-122 441.0 297 77.4
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 9.2e-122 440.7 314 74.2
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 1.2e-121 440.3 258 84.1
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 1.6e-121 439.9 251 84.1
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 2.1e-121 439.5 258 82.6
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 2.1e-121 439.5 302 75.5
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 2.7e-121 439.1 298 75.8
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 6.0e-121 438.0 299 75.9
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 6.0e-121 438.0 295 78.0
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 7.8e-121 437.6 237 88.6
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 7.8e-121 437.6 231 89.2
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 1.3e-120 436.8 297 75.1
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.3e-120 436.8 228 89.0
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 1.7e-120 436.4 302 75.8
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 1.7e-120 436.4 293 76.5
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 2.3e-120 436.0 280 78.6
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 2.3e-120 436.0 232 87.9
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 5.1e-120 434.9 282 76.6
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 5.1e-120 434.9 309 71.2
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 6.6e-120 434.5 280 78.6
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 6.6e-120 434.5 230 88.3
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 8.6e-120 434.1 252 83.3
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 8.6e-120 434.1 228 89.0
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 8.6e-120 434.1 228 89.0
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 8.6e-120 434.1 295 73.9
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.1e-119 433.7 228 89.5
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 2.5e-119 432.6 230 89.1
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 2.5e-119 432.6 311 75.9
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 2.5e-119 432.6 246 83.7
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 3.3e-119 432.2 242 84.3
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 4.3e-119 431.8 295 76.3
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 4.3e-119 431.8 286 78.3
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 4.3e-119 431.8 286 78.3
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 4.3e-119 431.8 307 72.0
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 5.6e-119 431.4 227 89.9
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 7.3e-119 431.0 285 76.8
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 9.6e-119 430.6 296 75.7
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 1.2e-118 430.3 283 77.7
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 1.6e-118 429.9 269 81.0
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 1.6e-118 429.9 230 88.7
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 2.1e-118 429.5 258 82.6
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 2.1e-118 429.5 258 82.6
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 2.8e-118 429.1 297 75.4
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 2.8e-118 429.1 246 82.9
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 3.6e-118 428.7 266 80.1
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 4.7e-118 428.3 289 75.1
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 4.7e-118 428.3 286 76.9
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 6.2e-118 427.9 230 88.7
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 8.1e-118 427.6 300 75.3
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.4e-117 426.8 238 82.8
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 1.4e-117 426.8 288 74.7
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 1.4e-117 426.8 288 74.7
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 1.4e-117 426.8 247 81.4
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 1.8e-117 426.4 291 75.9
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 1.8e-117 426.4 234 85.0
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 2.4e-117 426.0 291 75.9
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 4.0e-117 425.2 234 84.6
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 6.8e-117 424.5 299 73.6
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 8.9e-117 424.1 259 81.1
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 8.9e-117 424.1 297 74.1
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 1.2e-116 423.7 289 73.7
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 1.5e-116 423.3 289 74.0
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 3.4e-116 422.2 286 76.9
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 7.6e-116 421.0 297 72.4
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 9.9e-116 420.6 292 74.0
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 1.7e-115 419.9 228 84.2
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 2.9e-115 419.1 217 90.8
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 3.8e-115 418.7 304 72.7
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 8.4e-115 417.5 296 70.9
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 1.4e-114 416.8 273 75.1
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.2e-113 413.7 302 70.2
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 1.6e-113 413.3 229 86.5
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 1.6e-113 413.3 253 77.9
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 2.1e-113 412.9 257 76.7
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 2.7e-113 412.5 230 86.5
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 2.7e-113 412.5 284 74.3
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 4.6e-113 411.8 297 69.0
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 3.9e-112 408.7 257 77.0
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 3.3e-111 405.6 228 81.1
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 9.6e-111 404.1 260 75.4
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 4.8e-110 401.7 354 64.4
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 6.2e-110 401.4 267 73.0
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 2.4e-109 399.4 218 84.9
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 4.2e-106 388.7 239 77.0
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 1.6e-105 386.7 238 79.8
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 1.5e-103 380.2 199 89.9
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 3.3e-103 379.0 193 92.2
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 4.8e-102 375.2 225 76.9
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 1.2e-100 370.5 227 76.7
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 3.4e-100 369.0 193 87.0
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 5.8e-100 368.2 232 78.0
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 7.6e-100 367.9 300 65.0
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 2.9e-99 365.9 196 88.3
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 9.3e-98 360.9 203 85.7
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 5.1e-96 355.1 252 66.7
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 5.6e-95 351.7 232 75.9
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 5.5e-90 335.1 191 82.7
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 6.5e-83 311.6 163 88.3
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 3.2e-74 282.7 151 88.7
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 1.1e-69 267.7 197 72.6
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 5.9e-68 261.9 131 93.1
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 2.0e-63 246.9 237 51.5
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-56 224.2 220 50.5
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 5.7e-55 218.8 279 43.0
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 7.5e-47 191.8 98 85.7
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 7.7e-44 181.8 244 42.2
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 2.2e-43 180.3 226 40.3
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 1.8e-32 144.1 110 67.3
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 2.2e-30 137.1 93 75.3
TPR.G14062 Trifolium pratense HOM05D001872 ORTHO05D001859 3.3e-26 123.2 132 56.8
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 2.9e-22 110.2 69 75.4
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 5.4e-21 105.9 99 58.6
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 5.4e-21 105.9 99 58.6
Nitab4.5_0000740g0050 Nicotiana tabacum HOM05D003800 ORTHO05D011827 9.2e-21 105.1 84 63.1
Nitab4.5_0000195g0040 Nicotiana tabacum HOM05D003800 ORTHO05D004549 2.0e-20 104.0 119 47.9
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 4.6e-20 102.8 64 81.2
PGSC0003DMG400012082 Solanum tuberosum HOM05D003800 ORTHO05D004549 1.9e-13 80.9 95 54.7
Nitab4.5_0007043g0020 Nicotiana tabacum HOM05D013000 ORTHO05D011827 3.3e-10 70.1 67 56.7
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 2.6e-07 60.5 154 31.2


User provided reference genes

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