Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.5e-83 311.2 157 100.0
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.5e-58 227.6 127 92.1
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 6.1e-56 221.1 127 89.0
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 5.1e-55 218.0 127 87.4
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 4.3e-54 214.9 127 85.0
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.2e-53 212.6 127 84.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.8e-53 212.2 127 85.0
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.8e-52 209.5 127 82.7
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.4e-52 209.1 127 83.5
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.1e-52 208.8 127 82.7
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.2e-51 206.8 127 81.9
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 4.5e-51 204.9 127 78.0
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 4.5e-51 204.9 127 81.1
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 5.9e-51 204.5 127 81.1
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 5.9e-51 204.5 127 81.1
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.0e-50 203.8 127 78.7
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.3e-50 203.4 127 78.7
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.3e-50 203.4 127 79.5
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.7e-50 203.0 126 80.2
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.2e-50 202.6 126 79.4
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 5.0e-50 201.4 127 80.3
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.0e-50 201.4 125 80.8
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.0e-50 201.4 125 80.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.0e-50 201.4 125 80.8
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 6.5e-50 201.1 126 80.2
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 6.5e-50 201.1 127 79.5
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 6.5e-50 201.1 127 79.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 8.5e-50 200.7 126 78.6
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-49 200.3 127 78.7
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.4e-49 199.9 126 77.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.5e-49 199.1 127 80.3
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.5e-49 199.1 127 78.7
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.2e-49 198.7 127 78.7
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.5e-49 198.0 127 79.5
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 5.5e-49 198.0 126 78.6
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 7.2e-49 197.6 123 79.7
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 7.2e-49 197.6 127 78.0
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 9.4e-49 197.2 127 78.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 9.4e-49 197.2 127 78.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.2e-48 196.8 127 76.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.2e-48 196.8 127 77.2
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.6e-48 196.4 127 77.2
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 2.1e-48 196.1 127 77.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.1e-48 196.1 125 75.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.1e-48 196.1 127 75.6
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.1e-48 196.1 127 77.2
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.1e-48 196.1 127 77.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.7e-48 195.7 127 77.2
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 3.6e-48 195.3 127 75.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 3.6e-48 195.3 127 77.2
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.6e-48 195.3 126 74.6
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 4.6e-48 194.9 127 74.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 6.1e-48 194.5 127 75.6
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 7.9e-48 194.1 127 76.4
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 7.9e-48 194.1 126 74.6
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.0e-47 193.7 126 75.4
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.0e-47 193.7 127 76.4
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.4e-47 193.4 125 74.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.8e-47 193.0 127 75.6
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.3e-47 192.6 125 75.2
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.3e-47 192.6 127 76.4
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.3e-47 192.6 127 74.0
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.3e-47 192.6 127 74.8
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-47 192.6 127 77.2
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-47 192.6 127 77.2
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 3.0e-47 192.2 125 75.2
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.0e-47 192.2 127 73.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 3.0e-47 192.2 127 74.0
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 3.9e-47 191.8 127 74.0
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.9e-47 191.8 125 76.0
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.1e-47 191.4 127 74.0
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 6.7e-47 191.0 126 76.2
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 8.8e-47 190.7 127 73.2
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 8.8e-47 190.7 126 73.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.5e-46 189.9 125 74.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.5e-46 189.9 126 73.0
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 4.4e-46 188.3 123 75.6
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 5.7e-46 188.0 135 71.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 7.4e-46 187.6 127 74.0
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 9.7e-46 187.2 122 76.2
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 9.7e-46 187.2 126 72.2
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 9.7e-46 187.2 127 73.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.3e-45 186.8 127 74.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.7e-45 186.4 125 73.6
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.7e-45 186.4 125 73.6
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.7e-45 186.4 125 73.6
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.7e-45 186.4 133 69.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.8e-45 185.7 125 72.8
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 6.3e-45 184.5 125 74.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.1e-44 183.7 125 71.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.1e-44 183.7 125 71.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.8e-44 183.0 125 72.8
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.4e-44 182.6 127 75.6
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 5.3e-44 181.4 125 72.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.3e-44 181.4 125 72.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 6.9e-44 181.0 121 74.4
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 6.9e-44 181.0 125 72.0
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 6.9e-44 181.0 120 75.8
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 6.9e-44 181.0 126 69.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.5e-43 179.9 121 72.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 2.0e-43 179.5 125 72.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-43 179.5 125 72.0
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 2.0e-43 179.5 120 75.0
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.6e-43 179.1 127 73.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-43 178.7 125 72.0
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.8e-42 175.3 127 69.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.4e-41 173.3 127 71.7
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.6e-40 169.9 144 61.1
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.7e-40 169.1 120 69.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.7e-40 168.3 126 72.2
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.4e-36 156.0 101 76.2
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.3e-34 150.2 127 58.3
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.7e-34 149.8 127 62.2
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.9e-34 149.1 129 63.6
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.9e-34 149.1 98 74.5
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.8e-34 148.7 88 80.7
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.5e-33 146.7 100 71.0
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.5e-33 146.7 127 61.4
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 7.2e-33 144.4 127 54.3
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.6e-32 143.3 121 62.0
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-31 140.6 133 62.4
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 4.0e-31 138.7 120 60.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.2e-29 132.9 102 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 2.7e-27 125.9 126 49.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.5e-25 120.2 73 76.7
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 3.0e-23 112.5 125 45.6
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 5.2e-23 111.7 76 68.4
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.4e-22 109.0 90 57.8
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 9.8e-22 107.5 66 83.3
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.8e-21 105.1 100 62.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.4e-20 103.6 57 80.7
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.4e-20 102.8 53 88.7
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 7.0e-20 101.3 72 70.8
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.7e-19 99.4 123 48.0
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 3.3e-17 92.4 57 73.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 9.5e-17 90.9 121 45.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-16 90.5 57 75.4
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 7.5e-14 81.3 129 39.5
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 3.5e-11 72.4 163 36.2
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.8e-08 62.8 31 87.1
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-07 59.7 48 60.4
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.2e-07 58.5 31 83.9
Actinidia19316 Actinidia chinensis HOM05D004647 ORTHO05D005349 7.5e-06 54.7 40 77.5
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 9.8e-06 54.3 100 32.0


User provided reference genes

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