Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1688.3 840 100.0
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1473.4 857 86.5
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1446.8 857 85.3
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1443.3 850 85.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1437.6 861 85.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1427.5 936 79.9
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1411.0 857 82.8
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1408.3 859 82.7
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1407.5 859 82.7
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1387.5 923 77.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1384.0 860 81.6
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 859 81.5
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 873 82.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1370.1 860 80.7
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 864 79.9
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 857 79.8
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1360.1 857 79.6
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 857 80.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 858 79.5
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 860 79.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1355.1 860 79.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1354.7 863 79.5
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1352.4 860 78.5
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1352.0 860 79.2
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1351.7 860 78.6
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1351.3 854 79.2
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1350.9 861 79.2
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1349.3 866 78.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 861 79.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 880 77.2
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1347.0 866 78.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1346.6 866 78.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1345.5 857 79.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 857 79.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1338.9 857 78.5
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1338.9 857 78.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1338.6 857 78.9
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1338.2 852 79.0
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 877 77.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 860 78.0
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 857 78.5
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1336.2 866 78.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1335.9 864 78.0
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1332.8 865 77.8
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1331.6 860 77.6
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1329.3 861 77.5
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1329.3 857 78.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 857 78.8
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 866 79.1
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1322.4 860 78.3
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1320.8 861 77.4
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 858 78.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 860 77.1
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 857 77.4
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1310.8 862 76.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1309.3 857 76.4
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1306.6 879 76.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1304.7 912 74.1
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1299.3 860 76.3
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 876 74.5
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1296.6 910 72.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 860 75.7
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1286.6 862 75.9
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1285.0 865 76.5
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1280.4 876 73.9
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1279.2 855 74.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1276.2 962 69.6
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1275.0 876 73.7
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1270.8 876 73.5
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1258.0 800 78.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1255.4 878 72.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1249.6 935 69.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1244.6 935 68.7
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 880 72.3
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 880 72.3
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1242.6 880 72.3
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1241.5 880 72.2
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1241.5 880 72.2
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1238.8 880 72.0
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1238.0 880 72.0
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1232.2 880 71.8
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1229.5 852 70.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1228.8 880 71.8
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1227.2 880 71.2
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1226.8 854 72.0
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1222.6 880 71.6
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1208.7 777 78.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1203.0 870 68.5
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1149.0 741 78.4
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1131.7 836 70.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1111.3 843 68.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.8e-306 1054.7 849 67.4
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 2.0e-302 1042.3 857 59.5
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 2.0e-299 1032.3 849 60.2
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 2.1e-296 1022.3 1139 53.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.1e-292 1008.1 849 65.8
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.0e-291 1005.7 897 60.5
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 2.6e-278 962.2 853 56.6
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 3.3e-273 945.3 803 62.9
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.2e-267 926.8 637 73.3
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.6e-264 916.4 741 68.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.6e-262 909.1 710 68.0
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.6e-219 766.9 617 63.9
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.4e-212 743.8 457 80.7
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 6.5e-205 718.4 700 57.9
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 3.0e-202 709.5 472 78.4
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.9e-197 693.0 405 83.5
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.0e-194 684.5 447 78.5
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.1e-191 671.4 603 60.4
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.2e-180 636.0 358 84.6
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.3e-175 619.0 369 85.9
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-169 601.3 341 87.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.4e-161 572.8 874 38.8
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.1e-148 531.6 869 37.3
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.4e-121 440.3 840 33.0
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.7e-118 430.6 327 61.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 3.1e-114 417.2 374 62.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.8e-112 410.2 260 73.8
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-109 401.4 431 52.0
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 6.7e-109 399.4 1005 29.3
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.9e-100 371.3 332 55.7
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 6.9e-98 362.8 608 41.1
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.5e-92 345.1 238 75.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.0e-81 308.1 165 90.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.4e-77 295.4 320 49.4
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-75 288.9 157 82.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.8e-59 233.8 203 58.1
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.8e-43 181.4 97 88.7
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.3e-43 180.3 116 75.0
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-39 167.9 108 73.1
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 8.9e-37 159.8 101 76.2
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-33 149.1 98 77.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-33 148.3 94 78.7
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-31 141.4 94 74.5
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-30 139.0 85 80.0
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-30 138.3 106 71.7
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 8.0e-30 136.7 91 74.7
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-28 132.9 85 76.5
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-28 132.1 67 88.1
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 2.9e-27 128.3 96 71.9
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.9e-27 127.5 146 49.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.2e-26 124.8 100 68.0
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.0e-26 123.6 125 60.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.5e-25 121.3 91 72.5
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 3.9e-24 117.9 75 70.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.3e-23 114.8 72 79.2
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-22 112.5 88 68.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 4.7e-22 110.9 183 42.1
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-21 107.1 68 72.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.8e-20 104.0 67 77.6
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-19 101.7 61 75.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 6.4e-19 100.5 115 50.4
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 5.4e-18 97.4 82 65.9
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-16 93.2 52 82.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-16 92.8 54 88.9
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-16 91.7 52 80.8
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 9.5e-15 86.7 87 56.3
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 9.5e-15 86.7 87 56.3
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 3.1e-13 81.6 49 85.7
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-10 73.2 37 94.6
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 4.6e-09 67.8 85 52.9
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.0e-08 65.1 34 88.2
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 3.9e-08 64.7 38 84.2
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-06 59.7 39 76.9


User provided reference genes

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