Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024648 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.2e-97 359.8 177 100.0
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 7.7e-84 313.9 183 86.3
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.5e-82 309.7 183 85.2
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.5e-82 308.9 183 83.6
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 9.5e-82 307.0 183 84.7
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.1e-81 305.8 183 84.2
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 3.6e-81 305.1 183 83.1
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 3.6e-81 305.1 183 83.6
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 4.7e-81 304.7 183 83.6
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 4.7e-81 304.7 183 83.6
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 1.0e-80 303.5 183 83.6
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 2.3e-80 302.4 183 81.4
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 2.3e-80 302.4 183 83.1
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 3.0e-80 302.0 183 83.1
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 4.0e-80 301.6 183 81.4
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 5.2e-80 301.2 183 82.5
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 6.8e-80 300.8 183 82.5
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 6.8e-80 300.8 183 83.1
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.5e-79 299.7 183 82.0
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.0e-79 299.3 183 81.4
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.0e-79 299.3 183 81.4
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.0e-79 299.3 183 81.4
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.0e-79 299.3 183 81.4
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.0e-79 299.3 183 81.4
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 3.4e-79 298.5 183 80.9
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 3.4e-79 298.5 183 82.0
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.4e-79 298.5 183 80.9
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.4e-79 298.1 183 80.9
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 4.4e-79 298.1 183 80.3
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 5.7e-79 297.7 183 80.9
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 7.5e-79 297.4 183 80.3
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 7.5e-79 297.4 183 80.3
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 9.8e-79 297.0 183 80.9
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 2.2e-78 295.8 183 80.3
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 2.8e-78 295.4 183 80.9
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.7e-78 295.0 183 80.3
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 4.9e-78 294.7 183 78.1
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 4.9e-78 294.7 183 79.2
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 8.3e-78 293.9 183 80.3
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.4e-77 293.1 183 80.3
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.4e-77 293.1 183 79.8
Oeu064576.1 Olea europaea HOM05D001670 ORTHO05D002980 1.4e-77 293.1 183 79.8
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.8e-77 292.7 184 81.0
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 3.2e-77 292.0 183 80.3
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 3.2e-77 292.0 183 79.8
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.1e-77 291.6 183 79.8
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 4.1e-77 291.6 183 80.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 5.4e-77 291.2 184 80.4
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 5.4e-77 291.2 184 80.4
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 9.2e-77 290.4 183 79.2
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 9.2e-77 290.4 183 79.8
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 9.2e-77 290.4 183 78.1
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.2e-76 290.0 196 76.0
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 2.0e-76 289.3 183 80.3
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.0e-76 289.3 183 80.9
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.0e-76 289.3 183 78.7
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.0e-76 289.3 183 79.2
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 2.7e-76 288.9 183 78.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 3.5e-76 288.5 183 79.2
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 4.5e-76 288.1 183 78.1
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 5.9e-76 287.7 183 78.1
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.0e-75 287.0 183 78.1
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.3e-75 286.6 183 77.6
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 1.3e-75 286.6 183 78.1
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 1.7e-75 286.2 215 70.7
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.7e-75 286.2 183 77.0
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 3.9e-75 285.0 183 78.7
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 3.9e-75 285.0 185 78.9
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 6.6e-75 284.3 183 77.0
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 8.6e-75 283.9 183 77.6
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 8.6e-75 283.9 183 77.0
Psat4g209440 Pisum sativum HOM05D001670 ORTHO05D002980 8.6e-75 283.9 183 77.0
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.9e-74 282.7 183 78.1
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 4.3e-74 281.6 183 77.0
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 4.3e-74 281.6 184 78.3
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 5.6e-74 281.2 183 75.4
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 7.3e-74 280.8 183 76.5
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 7.3e-74 280.8 184 78.3
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 7.3e-74 280.8 184 78.8
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 9.5e-74 280.4 184 78.3
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 9.5e-74 280.4 183 76.5
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.2e-73 280.0 183 75.4
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.1e-73 279.3 182 76.4
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 2.8e-73 278.9 183 76.5
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 2.8e-73 278.9 183 76.5
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 4.7e-73 278.1 183 77.6
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 1.0e-72 276.9 186 74.7
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.0e-72 276.9 186 74.7
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 1.0e-72 276.9 183 75.4
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 1.4e-72 276.6 183 76.0
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 1.4e-72 276.6 183 75.4
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 1.8e-72 276.2 183 76.0
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 2.3e-72 275.8 183 75.4
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 2.3e-72 275.8 183 75.4
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 2.3e-72 275.8 183 75.4
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 4.0e-72 275.0 183 75.4
A09p69250 Brassica napus HOM05D001670 ORTHO05D002980 6.8e-72 274.2 183 75.4
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 6.8e-72 274.2 183 75.4
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 6.8e-72 274.2 183 75.4
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 2.0e-71 272.7 183 74.3
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.6e-71 272.3 183 75.4
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 9.8e-71 270.4 183 74.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 9.8e-71 270.4 183 74.3
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 9.8e-71 270.4 183 74.3
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.3e-70 270.0 183 74.9
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 2.2e-70 269.2 183 74.3
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 2.2e-70 269.2 183 73.8
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 3.7e-70 268.5 188 72.3
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.7e-70 268.5 183 73.8
CSS0049488 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 4.9e-70 268.1 183 74.3
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 8.3e-70 267.3 183 73.8
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 8.3e-70 267.3 183 72.7
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 1.9e-69 266.2 183 72.1
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 1.9e-69 266.2 183 72.1
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 1.9e-69 266.2 183 72.1
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.4e-69 265.8 183 73.2
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 2.4e-69 265.8 183 72.1
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 2.4e-69 265.8 183 72.1
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 2.4e-69 265.8 183 71.0
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 9.2e-69 263.8 183 72.1
Actinidia20640 Actinidia chinensis HOM05D001670 ORTHO05D002980 1.6e-68 263.1 168 81.0
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 2.7e-68 262.3 192 70.8
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 2.3e-67 259.2 183 72.1
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.3e-67 259.2 192 69.8
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 5.0e-67 258.1 183 69.9
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 5.0e-67 258.1 183 70.5
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.5e-66 256.5 183 69.9
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 9.5e-66 253.8 183 69.9
SHI13576 Sapria himalayana HOM05D001670 ORTHO05D002980 3.6e-65 251.9 210 61.4
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 1.4e-64 250.0 183 70.5
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 3.1e-64 248.8 183 67.2
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 4.0e-64 248.4 183 67.8
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 2.0e-63 246.1 183 68.9
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.4e-63 245.4 183 64.5
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 4.4e-63 245.0 184 67.9
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 7.1e-61 237.7 175 68.0
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-60 236.9 177 66.7
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.5e-60 235.3 183 61.7
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 4.6e-60 235.0 183 63.4
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 6.0e-60 234.6 183 64.5
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.0e-60 234.6 183 63.4
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 7.8e-60 234.2 162 75.9
Os03g0102366 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.7e-59 233.0 183 60.1
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 3.0e-59 232.3 144 81.9
vmacro06812 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 6.6e-59 231.1 183 62.8
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.5e-58 229.2 182 64.3
Haze_02720 Corylus avellana HOM05D001670 ORTHO05D002980 5.6e-58 228.0 161 73.9
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 7.3e-58 227.6 146 78.8
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 1.6e-57 226.5 183 64.5
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 2.1e-57 226.1 149 77.2
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.8e-56 223.0 144 79.2
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.7e-54 215.3 181 59.1
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 5.1e-51 204.9 184 54.9
Actinidia00132 Actinidia chinensis HOM05D001670 ORTHO05D010670 1.5e-50 203.4 166 65.7
CSS0042972 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.3e-50 202.2 138 71.0
ECA234G0500 Erigeron canadensis HOM05D001670 ORTHO05D002980 4.4e-47 191.8 181 54.7
MD07G1112800 Malus domestica HOM05D001670 ORTHO05D002980 4.9e-46 188.3 134 75.4
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 2.7e-44 182.6 183 51.9
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 4.8e-41 171.8 116 73.3
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 3.1e-40 169.1 117 76.1
Lsat_1_v5_gn_9_55460 Lactuca sativa HOM05D001670 ORTHO05D016190 1.3e-38 163.7 122 68.0
vmacro08837 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.7e-38 163.3 144 59.0
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 3.8e-38 162.2 204 45.1
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 1.4e-37 160.2 117 72.6
Lj4P515T29 Lonicera japonica HOM05D001670 ORTHO05D010670 3.1e-32 142.5 79 82.3
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 7.6e-31 137.9 181 39.8
Actinidia20637 Actinidia chinensis HOM05D001670 ORTHO05D010670 8.4e-30 134.4 149 52.3
HanXRQChr16g0519711 Helianthus annuus HOM05D001670 ORTHO05D002980 4.5e-23 112.1 95 53.7
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 4.9e-22 108.6 74 70.3
Actinidia34078 Actinidia chinensis HOM05D000196 ORTHO05D000279 8.4e-22 107.8 83 65.1
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 2.1e-20 103.2 71 71.8
MBI16_g16201_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 6.0e-20 101.7 54 87.0
Lj4A515T32 Lonicera japonica HOM05D001670 ORTHO05D002980 1.5e-18 97.1 55 83.6
MBI15_g34611_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 2.1e-17 93.2 74 63.5
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 2.4e-16 89.7 185 31.9
Actinidia32899 Actinidia chinensis HOM05D005596 ORTHO05D006994 2.0e-15 86.7 97 54.6
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 2.2e-14 83.2 75 58.7
MBI08_g34222_MAGBIO Magnolia biondii HOM05D000942 ORTHO05D010670 8.4e-14 81.3 43 86.0
Lsat_1_v5_gn_4_47640 Lactuca sativa HOM05D001670 ORTHO05D016190 9.3e-13 77.8 77 55.8
MBI17_g09694_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 5.3e-08 62.0 43 67.4
Actinidia06366 Actinidia chinensis HOM05D001670 ORTHO05D057084 1.3e-06 57.4 57 50.9


User provided reference genes

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