Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 0.0e+00 2011.1 981 100.0
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 0.0e+00 1260.7 1007 65.1
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 0.0e+00 1193.3 1110 58.6
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 0.0e+00 1180.2 1094 59.2
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 0.0e+00 1139.4 1008 61.1
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 8.2e-276 954.1 877 59.9
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 3.6e-255 885.6 1055 48.2
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 1.8e-251 873.2 1053 46.9
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 4.1e-251 872.1 1120 45.5
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 3.6e-247 859.0 1112 45.3
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 5.9e-242 841.6 1030 46.9
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 3.8e-241 839.0 1010 47.2
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 4.2e-240 835.5 1064 45.9
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 4.4e-237 825.5 1005 47.9
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 2.3e-233 813.1 886 50.7
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.9e-232 810.1 1056 45.3
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 9.5e-232 807.7 882 50.9
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 5.2e-230 802.0 933 48.3
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 7.5e-229 798.1 1036 45.0
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 7.5e-229 798.1 1034 44.0
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 4.9e-228 795.4 1007 47.0
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 4.9e-228 795.4 1047 45.6
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 1.0e-225 787.7 910 48.9
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 2.5e-224 783.1 944 48.3
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 4.7e-223 778.9 785 55.3
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 5.4e-219 765.4 1033 45.5
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 2.7e-218 763.1 1021 44.1
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 6.0e-218 761.9 1004 43.8
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.3e-217 760.8 1041 44.9
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 3.0e-217 759.6 1039 43.5
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 4.0e-214 749.2 1011 44.3
CSS0032060 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 2.0e-213 746.9 778 55.1
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 8.3e-212 741.5 1024 43.2
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 3.2e-211 739.6 1009 45.3
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.1e-210 736.9 1052 43.1
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 8.6e-209 731.5 1049 42.3
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 6.2e-207 725.3 1084 41.9
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 2.6e-205 719.9 1108 41.2
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 3.4e-205 719.5 1108 40.6
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 9.9e-205 718.0 1043 42.0
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 2.2e-204 716.8 1041 41.5
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 4.1e-203 712.6 1056 42.1
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 2.1e-202 710.3 1044 41.1
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 2.7e-202 709.9 1059 42.3
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 4.6e-202 709.1 1056 41.9
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 4.6e-202 709.1 1049 41.8
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 1.7e-201 707.2 1048 42.1
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.0e-201 706.4 1056 42.2
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 3.9e-201 706.1 1048 41.2
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.5e-200 703.4 1052 41.3
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.5e-200 703.4 1036 42.3
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 3.3e-200 703.0 1042 41.6
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 9.6e-200 701.4 1041 41.8
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 2.1e-199 700.3 1040 41.9
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 8.1e-199 698.4 712 53.1
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 3.1e-198 696.4 1041 41.6
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 2.6e-197 693.3 1048 40.4
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 5.8e-197 692.2 1041 41.3
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 1.4e-195 687.6 1029 41.9
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 1.6e-194 684.1 1035 41.2
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 6.0e-194 682.2 1000 42.8
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 3.9e-193 679.5 1041 41.7
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 2.5e-192 676.8 1064 39.7
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 7.6e-189 665.2 1030 39.9
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 9.9e-189 664.8 1027 40.4
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 2.2e-188 663.7 1067 39.5
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 2.9e-188 663.3 1040 39.7
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 3.8e-188 662.9 942 42.8
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 4.2e-187 659.4 1052 40.2
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 1.6e-186 657.5 1090 39.0
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 2.1e-186 657.1 1070 39.4
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 3.0e-185 653.3 1123 38.0
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 1.5e-184 651.0 1040 39.2
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 7.4e-184 648.7 1041 39.6
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 1.6e-183 647.5 1045 39.5
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 3.6e-183 646.4 891 43.7
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 3.1e-182 643.3 1039 39.8
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 2.2e-180 637.1 969 41.0
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.4e-179 633.6 936 42.7
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 9.3e-179 631.7 1024 39.3
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.7e-178 630.2 1044 38.9
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 2.7e-178 630.2 1043 38.4
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 3.5e-178 629.8 1039 38.5
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 6.7e-177 625.5 1076 36.6
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.5e-176 623.6 857 42.6
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 3.3e-176 623.2 1043 38.5
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 5.6e-176 622.5 1050 39.0
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 1.1e-174 618.2 1044 38.9
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 3.1e-174 616.7 776 44.3
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 9.0e-174 615.1 1018 39.3
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 1.2e-173 614.8 1043 38.4
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 1.0e-172 611.7 934 40.0
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 4.9e-172 609.4 776 44.2
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 1.1e-171 608.2 1042 39.1
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 1.4e-171 607.8 1046 39.2
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 3.2e-171 606.7 1049 38.2
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 6.0e-170 602.4 1041 37.2
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 5.1e-169 599.4 1043 38.3
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 7.4e-168 595.5 1034 36.8
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 9.6e-168 595.1 991 38.2
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 1.3e-167 594.7 1088 36.9
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 3.7e-167 593.2 1034 36.8
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 2.4e-166 590.5 1075 36.9
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 4.1e-166 589.7 1075 36.9
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 4.1e-166 589.7 1088 36.8
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 1.6e-162 577.8 1039 37.9
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 2.7e-162 577.0 1038 36.9
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 4.6e-162 576.2 686 45.9
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 1.5e-160 571.2 908 39.0
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.1e-158 565.1 757 44.0
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 2.8e-151 540.4 986 36.0
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 1.8e-150 537.7 1016 36.9
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 3.1e-150 537.0 962 36.6
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 2.0e-149 534.3 898 38.9
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 3.2e-147 526.9 946 38.4
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 1.5e-144 518.1 704 43.2
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 1.5e-144 518.1 704 43.2
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 5.7e-136 489.6 1098 33.1
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 9.4e-131 472.2 702 40.9
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 1.2e-125 455.3 541 47.9
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 7.7e-125 452.6 592 45.3
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 3.0e-121 440.7 971 32.5
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.1e-118 432.2 537 46.9
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 5.0e-116 423.3 601 41.4
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 1.5e-115 421.8 551 43.2
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 1.5e-107 395.2 851 34.0
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 6.0e-101 373.2 636 37.1
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 3.0e-100 370.9 636 36.8
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 1.1e-94 352.4 775 33.7
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 2.4e-73 281.6 968 27.4
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 4.2e-62 244.2 302 46.0
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 9.0e-57 226.5 872 25.9
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 5.7e-51 207.2 315 41.0
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 1.8e-49 202.2 383 36.6
HanXRQChr09g0266041 Helianthus annuus HOM05D003353 ORTHO05D003751 5.9e-48 197.2 310 38.4
Lsat_1_v5_gn_4_181221 Lactuca sativa HOM05D003353 ORTHO05D003751 3.3e-43 181.4 309 40.5
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.9e-38 165.6 350 34.3
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.8e-34 151.8 228 42.1
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.7e-34 151.4 230 41.3
Dinv35053 Davidia involucrata HOM05D003353 ORTHO05D003751 1.1e-33 149.8 108 68.5
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.4e-33 149.4 285 35.8
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.2e-32 146.4 294 35.0
Migut.H00129 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.7e-31 142.5 285 34.7
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.2e-31 142.1 239 36.8
Migut.H00132 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.3e-28 132.1 173 44.5
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 4.4e-27 127.9 253 34.4
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 1.4e-25 122.9 247 35.2
PSO732G0719 Papaver somniferum HOM05D001944 ORTHO05D002405 1.1e-22 113.2 63 79.4
Lalb_Chr14g0362821 Lupinus albus HOM05D003353 ORTHO05D003751 1.5e-22 112.8 103 57.3
Potri.017G072460 Populus trichocarpa HOM05D003353 ORTHO05D003751 1.5e-22 112.8 65 80.0
Lalb_Chr14g0362801 Lupinus albus HOM05D003353 ORTHO05D003751 6.7e-20 104.0 75 65.3
Carub.0001s0467 Capsella rubella HOM05D003353 ORTHO05D003751 1.1e-14 86.7 137 38.0
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 4.2e-14 84.7 230 29.1
CSS0024289 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 6.3e-10 70.9 35 91.4
Nitab4.5_0000113g0220 Nicotiana tabacum HOM05D030989 ORTHO05D030257 1.7e-07 62.8 123 34.1


User provided reference genes

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