Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.6e-53 211.8 109 100.0
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 7.2e-32 140.6 74 86.5
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 7.2e-32 140.6 76 85.5
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 1.2e-31 139.8 74 87.8
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 2.7e-31 138.7 74 86.5
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 6.1e-31 137.5 74 85.1
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 6.1e-31 137.5 74 85.1
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 6.1e-31 137.5 76 85.5
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 8.0e-31 137.1 74 85.1
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 8.0e-31 137.1 76 85.5
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 1.4e-30 136.3 74 86.5
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.8e-30 136.0 74 85.1
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 1.8e-30 136.0 74 85.1
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.8e-30 136.0 71 88.7
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 3.0e-30 135.2 72 86.1
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 3.0e-30 135.2 72 86.1
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 3.0e-30 135.2 76 84.2
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 4.0e-30 134.8 76 84.2
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 4.0e-30 134.8 76 82.9
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 4.0e-30 134.8 76 84.2
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 5.2e-30 134.4 76 84.2
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 6.8e-30 134.0 76 81.6
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 8.8e-30 133.7 76 81.6
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 8.8e-30 133.7 76 84.2
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 8.8e-30 133.7 76 81.6
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 1.2e-29 133.3 74 82.4
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 1.2e-29 133.3 74 82.4
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 1.2e-29 133.3 74 83.8
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 1.2e-29 133.3 74 82.4
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 1.5e-29 132.9 76 80.3
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 1.5e-29 132.9 76 82.9
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 1.5e-29 132.9 76 82.9
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 1.5e-29 132.9 77 77.9
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.5e-29 132.9 79 78.5
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.5e-29 132.9 74 82.4
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 1.5e-29 132.9 74 82.4
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 2.0e-29 132.5 76 81.6
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 2.0e-29 132.5 74 83.8
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 2.6e-29 132.1 74 81.1
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.6e-29 132.1 76 80.3
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 3.4e-29 131.7 74 82.4
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 3.4e-29 131.7 74 82.4
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 3.4e-29 131.7 71 85.9
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 4.4e-29 131.3 76 80.3
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 5.7e-29 131.0 74 82.4
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 5.7e-29 131.0 76 80.3
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 7.5e-29 130.6 76 77.6
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 7.5e-29 130.6 76 78.9
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 7.5e-29 130.6 76 78.9
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 7.5e-29 130.6 74 79.7
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 7.5e-29 130.6 76 81.6
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 7.5e-29 130.6 76 81.6
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 7.5e-29 130.6 76 81.6
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 7.5e-29 130.6 76 80.3
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 1.7e-28 129.4 76 78.9
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 1.7e-28 129.4 76 78.9
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 1.7e-28 129.4 76 76.3
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 2.2e-28 129.0 76 77.6
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 2.8e-28 128.6 76 78.9
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 3.7e-28 128.3 74 79.7
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 4.8e-28 127.9 76 75.0
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 4.8e-28 127.9 76 75.0
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 4.8e-28 127.9 76 75.0
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 4.8e-28 127.9 74 79.7
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 4.8e-28 127.9 76 77.6
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 8.3e-28 127.1 74 78.4
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 8.3e-28 127.1 72 80.6
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 1.1e-27 126.7 72 81.9
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.1e-27 126.7 76 77.6
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.1e-27 126.7 76 78.9
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.1e-27 126.7 76 76.3
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.4e-27 126.3 76 76.3
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 1.8e-27 125.9 76 75.0
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 1.8e-27 125.9 76 73.7
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 2.4e-27 125.6 76 73.7
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 2.4e-27 125.6 76 73.7
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 3.1e-27 125.2 74 77.0
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 3.1e-27 125.2 76 76.3
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 4.1e-27 124.8 76 75.0
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 4.1e-27 124.8 76 73.7
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 4.1e-27 124.8 76 73.7
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 4.1e-27 124.8 76 73.7
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 4.1e-27 124.8 76 73.7
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 4.1e-27 124.8 76 73.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.4e-27 124.4 76 73.7
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 5.4e-27 124.4 76 73.7
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 5.4e-27 124.4 76 73.7
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 7.0e-27 124.0 74 77.0
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 7.0e-27 124.0 76 73.7
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 9.1e-27 123.6 76 75.0
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 9.1e-27 123.6 74 77.0
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 9.1e-27 123.6 74 75.7
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 1.2e-26 123.2 74 75.7
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 1.6e-26 122.9 74 77.0
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.0e-26 122.5 74 75.7
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 2.0e-26 122.5 76 73.7
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 2.0e-26 122.5 76 73.7
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 2.7e-26 122.1 74 73.0
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 4.5e-26 121.3 74 73.0
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 5.9e-26 120.9 76 73.7
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 5.9e-26 120.9 76 73.7
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 5.9e-26 120.9 74 73.0
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 5.9e-26 120.9 69 79.7
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 7.7e-26 120.6 76 72.4
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 7.7e-26 120.6 76 72.4
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 7.7e-26 120.6 76 72.4
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 7.7e-26 120.6 76 72.4
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 7.7e-26 120.6 76 72.4
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 7.7e-26 120.6 74 77.0
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 7.7e-26 120.6 74 75.7
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 7.7e-26 120.6 74 75.7
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 7.7e-26 120.6 76 69.7
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 1.0e-25 120.2 76 71.1
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 1.0e-25 120.2 74 70.3
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.3e-25 119.8 76 71.1
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.3e-25 119.8 76 72.4
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.3e-25 119.8 76 71.1
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 2.3e-25 119.0 76 72.4
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.3e-25 119.0 76 68.4
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 2.3e-25 119.0 76 67.1
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 3.8e-25 118.2 76 71.1
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 3.8e-25 118.2 76 71.1
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 3.8e-25 118.2 76 71.1
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 3.8e-25 118.2 76 71.1
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 5.0e-25 117.9 74 68.9
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 6.5e-25 117.5 74 74.3
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 6.5e-25 117.5 76 69.7
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 1.1e-24 116.7 74 68.9
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 9.5e-24 113.6 74 66.2
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 1.2e-23 113.2 74 71.6
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.6e-23 112.8 66 75.8
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 3.6e-23 111.7 65 75.4
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 9.8e-21 103.6 76 61.8
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.8e-20 102.1 76 57.9
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 6.3e-20 100.9 76 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 8.3e-20 100.5 72 62.5
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 3.1e-19 98.6 76 59.2
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 4.5e-18 94.7 65 63.1
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 2.5e-16 89.0 70 52.9
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 3.3e-16 88.6 77 49.4
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 4.3e-16 88.2 76 56.6
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 5.8e-13 77.8 56 55.4
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.9e-11 72.8 43 74.4
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 4.1e-11 71.6 66 45.5
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 4.1e-11 71.6 71 42.3
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 2.7e-10 68.9 37 81.1
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 5.0e-09 64.7 66 40.9
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.5e-08 63.2 73 39.7
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 9.5e-08 60.5 30 83.3


User provided reference genes

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