Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024449 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 7.2e-49 196.8 92 100.0
CSS0018701 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 4.8e-37 157.5 96 83.3
CSS0037923 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 5.7e-30 134.0 96 75.0
CSS0004825 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 8.2e-29 130.2 68 89.7
CSS0030659 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 2.9e-26 121.7 76 80.3
Hma1.2p1_0534F.1_g173690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 8.5e-26 120.2 75 76.0
Hma1.2p1_1265F.1_g271353 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 8.5e-26 120.2 75 76.0
Dinv38803 Davidia involucrata HOM05D004522 ORTHO05D005887 1.1e-25 119.8 75 76.0
Hma1.2p1_0495F.1_g165690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 1.2e-24 116.3 75 73.3
Nn4g23566 Nelumbo nucifera HOM05D004522 ORTHO05D005887 1.2e-24 116.3 75 73.3
Gohir.A06G108300 Gossypium hirsutum HOM05D004522 ORTHO05D005887 3.6e-24 114.8 75 72.0
Gorai.010G125500 Gossypium raimondii HOM05D004522 ORTHO05D005887 3.6e-24 114.8 75 72.0
Dinv37488 Davidia involucrata HOM05D004522 ORTHO05D005887 1.0e-23 113.2 72 76.4
Gohir.D06G110400 Gossypium hirsutum HOM05D004522 ORTHO05D005887 1.0e-23 113.2 73 74.0
vmacro18846 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 1.8e-23 112.5 75 70.7
Oeu005158.2 Olea europaea HOM05D004522 ORTHO05D005887 2.3e-23 112.1 76 73.7
CiPaw.07G210600 Carya illinoinensis HOM05D004522 ORTHO05D005887 3.0e-23 111.7 75 72.0
ECA234G1339 Erigeron canadensis HOM05D004522 ORTHO05D005887 5.2e-23 110.9 75 69.3
Lj8C583T4 Lonicera japonica HOM05D004522 ORTHO05D005887 5.2e-23 110.9 75 72.0
Cfa013296 Carpinus fangiana HOM05D004522 ORTHO05D005887 8.8e-23 110.2 75 73.3
Eucgr.C02139 Eucalyptus grandis HOM05D004522 ORTHO05D005887 8.8e-23 110.2 76 68.4
Thecc.09G000400 Theobroma cacao HOM05D004522 ORTHO05D005887 8.8e-23 110.2 75 68.0
Haze_21779 Corylus avellana HOM05D004522 ORTHO05D005887 3.4e-22 108.2 75 72.0
Sc10g0004210 Simmondsia chinensis HOM05D004522 ORTHO05D005887 3.4e-22 108.2 75 66.7
Rhsim08G0228200 Rhododendron simsii HOM05D004522 ORTHO05D005887 5.7e-22 107.5 75 70.7
Migut.C00355 Erythranthe guttata HOM05D004522 ORTHO05D005887 7.5e-22 107.1 76 68.4
Potri.006G279700 Populus trichocarpa HOM05D004522 ORTHO05D005887 9.8e-22 106.7 75 68.0
CANSAT25G3238 Cannabis sativa HOM05D004522 ORTHO05D005887 1.3e-21 106.3 76 69.7
unitig_60.g25825 Utricularia gibba HOM05D004522 ORTHO05D005887 1.3e-21 106.3 75 68.0
Actinidia21721 Actinidia chinensis HOM05D004522 ORTHO05D005887 1.7e-21 105.9 75 68.0
Sed0013871 Sechium edule HOM05D004522 ORTHO05D005887 2.2e-21 105.5 75 68.0
RhsimUnG0118700 Rhododendron simsii HOM05D004522 ORTHO05D005887 3.7e-21 104.8 75 68.0
GSVIVG01035576001 Vitis vinifera HOM05D004522 ORTHO05D005887 3.7e-21 104.8 75 72.0
AUR62020658 Chenopodium quinoa HOM05D004522 ORTHO05D005887 6.3e-21 104.0 75 66.7
Ciclev10007345m.g Citrus clementina HOM05D004522 ORTHO05D005887 6.3e-21 104.0 75 66.7
Sabra06G0216700 Salix brachista HOM05D004522 ORTHO05D005887 6.3e-21 104.0 82 63.4
QL12p025652 Quercus lobata HOM05D004522 ORTHO05D005887 1.1e-20 103.2 75 69.3
EL10Ac2g03676 Beta vulgaris HOM05D004522 ORTHO05D005887 1.4e-20 102.8 74 64.9
Cpa.g.sc246.4 Carica papaya HOM05D004522 ORTHO05D005887 1.4e-20 102.8 75 66.7
Nitab4.5_0000844g0320 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.4e-20 102.8 76 63.2
Nitab4.5_0011308g0040 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.4e-20 102.8 76 63.2
Prupe.1G457500 Prunus persica HOM05D004522 ORTHO05D005887 1.8e-20 102.4 75 66.7
AUR62028071 Chenopodium quinoa HOM05D004522 ORTHO05D005887 2.4e-20 102.1 75 65.3
AUR62043895 Chenopodium quinoa HOM05D004522 ORTHO05D005887 2.4e-20 102.1 75 65.3
HanXRQChr16g0521121 Helianthus annuus HOM05D004522 ORTHO05D005887 3.1e-20 101.7 76 65.8
Atru.chr7.2700 Acer truncatum HOM05D004522 ORTHO05D005887 4.1e-20 101.3 75 62.7
AUR62044451 Chenopodium quinoa HOM05D004522 ORTHO05D005887 4.1e-20 101.3 73 67.1
Solyc02g081910.2 Solanum lycopersicum HOM05D004522 ORTHO05D005887 4.1e-20 101.3 76 61.8
Sopen02g026540 Solanum pennellii HOM05D004522 ORTHO05D005887 4.1e-20 101.3 76 61.8
VMungo0251G2701 Vigna mungo HOM05D004522 ORTHO05D005887 4.1e-20 101.3 75 66.7
Ah.14g088390 Amaranthus hybridus HOM05D004522 ORTHO05D005887 5.4e-20 100.9 74 64.9
Peaxi162Scf00036g01311 Petunia axillaris HOM05D004522 ORTHO05D005887 5.4e-20 100.9 76 63.2
Psat6g033360 Pisum sativum HOM05D004522 ORTHO05D005887 5.4e-20 100.9 75 65.3
Lalb_Chr22g0361201 Lupinus albus HOM05D004522 ORTHO05D005887 7.0e-20 100.5 75 61.3
CAN.G809.41 Capsicum annuum HOM05D004522 ORTHO05D005887 1.2e-19 99.8 76 61.8
PSO063G2748 Papaver somniferum HOM05D004522 ORTHO05D005887 1.2e-19 99.8 75 66.7
PSO782G1701 Papaver somniferum HOM05D004522 ORTHO05D005887 1.2e-19 99.8 75 66.7
Phvul.002G181900 Phaseolus vulgaris HOM05D004522 ORTHO05D005887 1.2e-19 99.8 75 66.7
Manes.03G000450 Manihot esculenta HOM05D004522 ORTHO05D005887 2.0e-19 99.0 76 65.8
THA.LOC104819919 Tarenaya hassleriana HOM05D004522 ORTHO05D005887 2.0e-19 99.0 75 61.3
RcHm_v2.0_Chr6g0305241 Rosa chinensis HOM05D004522 ORTHO05D005887 5.9e-19 97.4 75 61.3
Ca_01520_v3 Cicer arietinum L. HOM05D004522 ORTHO05D005887 7.7e-19 97.1 75 64.0
TAR629G0385 Trochodendron aralioides HOM05D004522 ORTHO05D005887 7.7e-19 97.1 72 62.5
ClCG05G026380 Citrullus lanatus HOM05D004522 ORTHO05D005887 1.0e-18 96.7 75 64.0
Glyma.14G137100 Glycine max HOM05D004522 ORTHO05D005887 1.0e-18 96.7 75 61.3
MBI16_g42310_MAGBIO Magnolia biondii HOM05D004522 ORTHO05D005887 1.0e-18 96.7 72 63.9
arahy.Tifrunner.gnm1.ann1.696W46 Arachis hypogaea HOM05D004522 ORTHO05D005887 1.3e-18 96.3 76 63.2
SGA_v2.0_scaffold62G21366 Striga asiatica HOM05D004522 ORTHO05D005887 1.3e-18 96.3 76 61.8
Glyma.17G196400 Glycine max HOM05D004522 ORTHO05D005887 2.2e-18 95.5 75 62.7
FvH4_2g36580 Fragaria vesca HOM05D004522 ORTHO05D005887 2.9e-18 95.1 75 61.3
FAN20G0828 Fragaria x ananassa HOM05D004522 ORTHO05D005887 2.9e-18 95.1 76 63.2
Lj5g0011494 Lotus japonicus HOM05D004522 ORTHO05D005887 2.9e-18 95.1 72 63.9
arahy.Tifrunner.gnm1.ann1.IIX4FM Arachis hypogaea HOM05D004522 ORTHO05D005887 3.8e-18 94.7 76 61.8
Aa31LG2G19110 Aethionema arabicum HOM05D004522 ORTHO05D005887 5.0e-18 94.4 75 62.7
Sed0008341 Sechium edule HOM05D004522 ORTHO05D005887 5.0e-18 94.4 72 63.9
Aa31LG2G19120 Aethionema arabicum HOM05D004522 ORTHO05D005887 6.5e-18 94.0 76 61.8
vmacro20064 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 6.5e-18 94.0 75 65.3
CANSAT54G0998 Cannabis sativa HOM05D004522 ORTHO05D005887 1.1e-17 93.2 76 64.5
FAN27G1482 Fragaria x ananassa HOM05D004522 ORTHO05D005887 1.1e-17 93.2 75 58.7
Sp7g29090 Schrenkiella parvula HOM05D004522 ORTHO05D005887 1.1e-17 93.2 75 56.0
Thhalv10024242m.g Eutrema salsugineum HOM05D004522 ORTHO05D005887 1.5e-17 92.8 75 54.7
Cc09_g04950 Coffea canephora HOM05D004522 ORTHO05D005887 1.9e-17 92.4 77 59.7
MD08G1125900 Malus domestica HOM05D004522 ORTHO05D005887 2.5e-17 92.0 76 61.8
BcaNung01535 Brassica carinata HOM05D004522 ORTHO05D005887 3.2e-17 91.7 75 54.7
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 3.2e-17 91.7 75 54.7
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 3.2e-17 91.7 75 54.7
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 3.2e-17 91.7 75 54.7
BraA03t15100Z Brassica rapa HOM05D004522 ORTHO05D005887 3.2e-17 91.7 75 54.7
CARHR239110 Cardamine hirsuta HOM05D004522 ORTHO05D005887 3.2e-17 91.7 75 53.3
TWI63G0055 Tripterygium wilfordii HOM05D004522 ORTHO05D005887 7.2e-17 90.5 76 61.8
AT4G31210 Arabidopsis thaliana HOM05D004522 ORTHO05D005887 9.5e-17 90.1 75 53.3
Carub.0007s0933 Capsella rubella HOM05D004522 ORTHO05D005887 9.5e-17 90.1 76 57.9
SalBow1G6309 Salvia bowleyana HOM05D004522 ORTHO05D005887 9.5e-17 90.1 77 62.3
MELO3C003609.2 Cucumis melo HOM05D004522 ORTHO05D005887 1.2e-16 89.7 75 58.7
DCAR_006332 Daucus carota HOM05D004522 ORTHO05D005887 1.2e-16 89.7 78 61.5
Migut.E00600 Erythranthe guttata HOM05D004522 ORTHO05D005887 1.2e-16 89.7 74 58.1
Hund03258 Selenicereus undatus HOM05D004522 ORTHO05D005887 1.6e-16 89.4 75 53.3
AL7G20870 Arabidopsis lyrata HOM05D004522 ORTHO05D005887 2.8e-16 88.6 75 52.0
BcaC09g51903 Brassica carinata HOM05D004522 ORTHO05D005887 2.8e-16 88.6 76 55.3
A01p07030 Brassica napus HOM05D004522 ORTHO05D005887 2.8e-16 88.6 76 55.3
C01p07770 Brassica napus HOM05D004522 ORTHO05D005887 2.8e-16 88.6 76 55.3
BraA01t00655Z Brassica rapa HOM05D004522 ORTHO05D005887 2.8e-16 88.6 76 55.3
BolC1t00764H Brassica oleracea HOM05D004522 ORTHO05D005887 3.6e-16 88.2 76 55.3
Psat6g033400 Pisum sativum HOM05D004522 ORTHO05D005887 2.3e-15 85.5 75 56.0
TPR.G12110 Trifolium pratense HOM05D004522 ORTHO05D005887 5.2e-15 84.3 77 59.7
Actinidia32105 Actinidia chinensis HOM05D004522 ORTHO05D005887 6.8e-15 84.0 71 60.6
COL.COLO4_18648 Corchorus olitorius HOM05D004522 ORTHO05D005887 6.8e-15 84.0 75 57.3
Aqoxy3G03771 Aquilegia oxysepala HOM05D004522 ORTHO05D005887 1.2e-14 83.2 77 54.5
ATR0691G178 Amborella trichopoda HOM05D004522 ORTHO05D005887 1.5e-14 82.8 74 52.7
CsaV3_3G047220 Cucumis sativus L. HOM05D004522 ORTHO05D005887 7.5e-14 80.5 77 53.2
Medtr0229s0020 Medicago truncatula HOM05D004522 ORTHO05D005887 9.8e-14 80.1 77 61.0
Medtr0245s0010 Medicago truncatula HOM05D004522 ORTHO05D005887 9.8e-14 80.1 77 61.0
Medtr1g009315 Medicago truncatula HOM05D004522 ORTHO05D005887 9.8e-14 80.1 77 61.0
TPR.G39482 Trifolium pratense HOM05D004522 ORTHO05D005887 1.7e-13 79.3 80 55.0
MD15G1105700 Malus domestica HOM05D004522 ORTHO05D005887 4.9e-13 77.8 78 52.6
PGSC0003DMG400012781 Solanum tuberosum HOM05D004522 ORTHO05D005887 4.1e-12 74.7 71 53.5
Medtr1g009570 Medicago truncatula HOM05D004522 ORTHO05D005887 3.5e-11 71.6 71 54.9
PSO478G3803 Papaver somniferum HOM05D004522 ORTHO05D005887 7.8e-11 70.5 77 44.2
Zm00001eb380580 Zea mays HOM05D004522 ORTHO05D005887 7.8e-11 70.5 75 45.3
Zm00001eb280820 Zea mays HOM05D004522 ORTHO05D005887 1.3e-10 69.7 75 44.0
HPP92_015554 Vanilla planifolia HOM05D004522 ORTHO05D005887 8.6e-10 67.0 83 38.6
CDE02G2996 Ceratophyllum demersum HOM05D004522 ORTHO05D005887 1.1e-09 66.6 73 47.9
SEGI_38297 Sequoiadendron giganteum HOM05D004522 ORTHO05D005887 3.3e-09 65.1 74 44.6
AUR62038716 Chenopodium quinoa HOM05D004522 ORTHO05D005887 1.4e-07 59.7 31 83.9
Lsat_1_v5_gn_4_39420 Lactuca sativa HOM05D004522 ORTHO05D005887 1.8e-07 59.3 37 67.6


User provided reference genes

Program Settings