Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 5.9e-236 820.5 409 100.0
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 5.4e-173 611.3 392 79.3
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 8.7e-171 604.0 419 77.8
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 2.8e-169 599.0 428 75.5
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 6.4e-166 587.8 472 68.9
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 6.9e-152 541.2 394 72.6
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 1.3e-150 537.0 384 72.1
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 3.2e-149 532.3 389 71.2
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 7.1e-149 531.2 366 73.8
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 7.1e-149 531.2 408 69.6
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 2.7e-148 529.3 382 71.7
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 6.0e-148 528.1 373 71.6
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 1.8e-147 526.6 383 72.8
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 1.1e-146 523.9 394 71.1
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 1.3e-145 520.4 395 70.1
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.8e-145 518.5 382 70.4
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 6.2e-145 518.1 384 70.1
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 6.2e-145 518.1 382 69.6
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 8.2e-145 517.7 368 72.3
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 8.2e-145 517.7 387 70.5
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.1e-144 517.3 352 73.6
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 3.1e-144 515.8 382 70.2
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 6.9e-144 514.6 368 72.8
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.2e-143 513.8 381 69.3
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 2.0e-143 513.1 381 69.8
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 2.6e-143 512.7 381 68.5
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 6.5e-142 508.1 344 74.7
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 1.4e-141 506.9 388 68.0
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 2.5e-141 506.1 380 69.5
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.2e-140 503.8 316 77.2
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.6e-140 503.4 391 66.8
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 4.6e-140 501.9 316 75.6
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 7.9e-140 501.1 368 71.7
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.0e-139 500.7 383 68.1
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 6.7e-139 498.0 378 66.9
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.3e-137 493.8 373 67.0
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 2.8e-137 492.7 350 70.6
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 8.2e-137 491.1 383 65.5
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 1.8e-136 490.0 381 68.8
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.4e-136 489.6 399 64.9
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 2.4e-136 489.6 387 66.4
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 3.1e-136 489.2 395 65.3
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 3.1e-136 489.2 387 67.2
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 5.3e-136 488.4 367 67.8
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.0e-135 486.5 382 68.1
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 2.6e-135 486.1 366 68.0
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 4.5e-135 485.3 305 78.0
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.5e-135 485.3 307 77.9
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 5.9e-135 485.0 387 65.9
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.7e-134 483.4 376 64.1
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.9e-133 479.9 385 67.8
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 5.5e-133 478.4 394 63.7
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 9.4e-133 477.6 402 65.2
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 6.1e-132 474.9 376 65.4
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 2.3e-131 473.0 318 69.5
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 1.1e-130 470.7 391 65.5
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 2.0e-130 469.9 361 67.3
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 2.5e-130 469.5 378 65.3
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 4.3e-130 468.8 363 67.2
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 3.7e-129 465.7 362 66.3
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 3.7e-129 465.7 394 61.4
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 4.8e-129 465.3 364 66.5
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 4.8e-129 465.3 364 67.3
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 1.1e-128 464.2 341 69.5
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 1.4e-128 463.8 381 61.9
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 2.4e-128 463.0 319 69.9
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 9.1e-128 461.1 414 63.3
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 1.5e-127 460.3 361 65.7
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 2.0e-127 459.9 363 66.1
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 2.0e-127 459.9 365 66.8
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 2.6e-127 459.5 362 66.9
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 2.6e-127 459.5 364 67.0
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 3.4e-127 459.1 370 65.9
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 7.7e-127 458.0 361 65.7
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 7.7e-127 458.0 335 66.0
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 2.2e-126 456.4 362 65.7
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 3.8e-126 455.7 314 72.3
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 6.5e-126 454.9 366 64.8
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 3.6e-124 449.1 377 63.9
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 3.3e-122 442.6 371 60.1
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 2.4e-120 436.4 312 68.9
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 2.0e-119 433.3 315 69.8
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 8.5e-118 427.9 297 73.7
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 2.7e-116 422.9 323 70.3
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 3.3e-114 416.0 368 60.9
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.0e-110 404.4 318 65.7
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 1.8e-107 393.7 375 55.7
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.1e-104 384.4 321 60.7
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.1e-104 384.4 321 60.7
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.4e-104 384.0 379 57.5
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 2.4e-104 383.3 378 54.2
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 1.7e-102 377.1 328 57.6
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 2.9e-102 376.3 311 63.7
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 1.0e-99 367.9 321 55.8
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 3.1e-96 356.3 342 53.5
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 3.1e-96 356.3 236 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 5.9e-95 352.1 346 53.5
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 7.7e-95 351.7 319 56.1
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 1.0e-94 351.3 368 56.0
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 4.5e-87 325.9 351 51.6
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 3.3e-85 319.7 195 80.5
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 2.1e-76 290.4 180 76.7
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.4e-75 287.7 261 57.5
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 8.9e-75 285.0 173 81.5
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 4.4e-74 282.7 167 83.2
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.3e-69 266.2 167 77.8
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 1.4e-67 261.2 350 41.4
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 6.4e-65 252.3 418 37.6
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 3.0e-62 243.4 135 85.2
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 2.1e-44 184.1 228 47.8
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.2e-39 168.3 137 65.7
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 3.3e-29 133.7 95 69.5
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 3.0e-22 110.5 366 28.7
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 8.2e-20 102.4 57 89.5
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 2.0e-18 97.8 184 37.5
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 1.0e-17 95.5 51 82.4
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 6.3e-12 76.3 157 29.3
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 4.2e-08 63.5 46 60.9
PRCOL_00005231 Prasinoderma coloniale HOM05D007129 ORTHO05D008680 1.4e-06 58.5 172 29.7
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 1.4e-06 58.5 164 31.1
EL10Ac5g10824 Beta vulgaris HOM05D007129 ORTHO05D008680 2.3e-06 57.8 113 35.4
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 2.3e-06 57.8 115 35.7
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 3.9e-06 57.0 84 41.7
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 3.9e-06 57.0 84 41.7
CAN.G853.11 Capsicum annuum HOM05D007129 ORTHO05D008680 5.1e-06 56.6 84 41.7
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 5.1e-06 56.6 63 46.0
Actinidia34958 Actinidia chinensis HOM05D002131 ORTHO05D008680 8.8e-06 55.8 115 35.7
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 8.8e-06 55.8 74 44.6


User provided reference genes

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