Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.9e-284 980.7 470 100.0
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.4e-171 605.5 510 59.4
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 4.5e-171 605.1 450 67.8
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.5e-168 595.5 492 60.8
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.7e-159 564.3 439 62.9
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-158 563.1 450 62.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.3e-158 562.0 450 62.9
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 3.2e-137 492.7 505 51.7
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 2.2e-133 479.9 458 55.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.1e-132 475.7 484 51.2
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 7.0e-132 474.9 508 52.4
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 3.2e-129 466.1 486 49.4
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.7e-128 463.0 468 52.4
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 8.0e-128 461.5 441 54.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.7e-126 455.3 506 49.2
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 6.3e-125 451.8 460 50.2
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.8e-124 450.3 485 50.5
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 9.1e-124 448.0 460 49.8
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.7e-120 436.4 461 52.1
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 6.1e-120 435.3 465 50.1
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 5.2e-119 432.2 376 57.4
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 5.7e-118 428.7 450 51.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 3.7e-117 426.0 475 49.9
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.1e-116 422.9 473 49.9
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 7.0e-116 421.8 496 46.6
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.7e-115 419.9 476 47.9
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.5e-115 419.5 506 46.0
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.2e-113 411.8 465 49.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 9.5e-113 411.4 460 46.1
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-112 411.0 440 50.5
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.1e-112 408.7 460 46.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.0e-111 407.9 458 46.7
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.3e-111 406.8 450 50.4
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 2.3e-111 406.8 483 47.4
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 4.0e-111 406.0 479 47.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 8.9e-111 404.8 434 49.5
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.5e-110 404.1 382 53.9
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 2.0e-110 403.7 460 49.1
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.6e-110 403.3 430 51.4
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.1e-108 397.9 457 46.6
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.1e-108 397.9 474 46.8
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.4e-108 396.7 439 49.7
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 4.1e-108 396.0 486 45.1
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.1e-105 387.9 461 47.5
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 7.3e-105 385.2 456 48.2
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 9.5e-105 384.8 393 52.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-104 384.4 471 46.9
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 4.7e-104 382.5 441 46.7
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 4.7e-104 382.5 449 45.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.7e-104 382.5 471 46.7
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 5.2e-103 379.0 484 45.0
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-102 377.5 373 53.4
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.5e-102 377.5 487 44.1
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.4e-102 375.9 428 44.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 9.8e-102 374.8 453 45.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.9e-101 373.2 431 48.7
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.9e-100 370.5 432 46.8
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.9e-100 370.5 431 44.3
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.6e-99 367.5 446 46.2
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 4.6e-99 365.9 440 46.4
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 7.8e-99 365.2 375 51.5
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.3e-98 363.6 363 49.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.5e-97 360.1 445 46.7
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 3.6e-96 356.3 290 57.9
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.7e-96 355.9 368 51.4
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.1e-95 354.8 483 42.0
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.2e-94 351.3 383 50.9
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.5e-94 350.9 397 48.1
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.3e-93 347.8 373 49.6
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 4.9e-93 345.9 424 43.9
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.1e-92 342.8 441 44.7
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 7.1e-92 342.0 438 44.5
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 9.2e-92 341.7 377 49.1
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.2e-91 341.3 387 47.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 3.9e-90 336.3 384 47.4
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 8.6e-90 335.1 364 49.7
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.9e-89 334.0 379 48.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.9e-89 334.0 451 42.8
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 2.1e-88 330.5 412 43.9
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 5.2e-87 325.9 448 42.4
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 7.5e-86 322.0 330 52.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 7.5e-86 322.0 383 46.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 3.7e-85 319.7 311 51.8
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 2.4e-84 317.0 525 37.9
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.8e-83 312.0 454 43.0
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.1e-81 308.1 449 40.1
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 9.6e-81 305.1 447 42.3
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.6e-80 303.1 449 39.6
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 8.1e-80 302.0 444 42.1
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 8.1e-80 302.0 445 41.6
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.1e-79 301.6 444 42.3
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.4e-79 301.2 482 38.8
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.4e-79 301.2 444 41.9
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 3.1e-79 300.1 444 41.9
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 9.9e-78 295.0 471 40.6
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 9.9e-78 295.0 447 40.5
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.2e-77 293.9 446 41.7
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.9e-77 293.5 446 41.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.9e-76 290.8 494 37.7
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 7.8e-75 285.4 442 40.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.3e-74 283.9 461 38.0
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 6.6e-74 282.3 449 39.4
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.6e-74 282.3 232 59.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.4e-71 273.9 451 38.4
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.4e-71 273.9 449 38.5
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.2e-70 271.6 255 56.1
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.8e-69 266.5 288 50.0
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.9e-68 264.2 297 46.8
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.1e-67 260.8 282 48.9
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.8e-67 258.8 321 44.9
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.7e-66 255.4 291 46.0
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.3e-65 253.1 413 35.8
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 9.0e-63 245.4 375 41.9
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.4e-60 238.0 305 43.0
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.4e-60 236.1 311 42.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.6e-59 234.6 402 38.6
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 7.4e-57 225.7 305 39.0
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 2.0e-54 217.6 242 48.8
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.5e-54 216.5 332 40.4
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 1.7e-53 214.5 154 68.2
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.5e-53 212.6 272 45.2
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-52 211.8 351 39.3
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 4.6e-51 206.5 356 36.0
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 3.7e-48 196.8 239 46.4
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.2e-45 187.6 385 35.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-44 184.5 331 35.3
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 7.1e-44 182.6 322 37.3
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 4.6e-43 179.9 145 57.9
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.0e-42 178.7 371 31.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 5.7e-41 172.9 249 41.0
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.3e-40 171.8 146 56.8
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.7e-40 170.2 542 28.6
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.3e-40 169.5 541 26.4
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.1e-39 166.8 453 29.6
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.5e-36 157.5 260 35.0
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 7.2e-36 156.0 224 39.7
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 4.6e-35 153.3 149 53.7
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.1e-35 152.9 221 41.6
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.7e-32 144.8 107 63.6
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.8e-32 144.1 332 30.4
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 6.9e-31 139.4 173 40.5
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.0e-30 137.9 96 61.5
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-28 131.7 383 30.5
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 8.8e-26 122.5 102 57.8
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 8.2e-24 115.9 464 26.5
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 4.5e-22 110.2 465 24.7
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 4.5e-22 110.2 281 30.6
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.7e-21 108.2 138 42.0
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-20 105.5 360 27.2
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 3.2e-20 104.0 192 34.4
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 3.2e-20 104.0 268 29.5
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 4.2e-20 103.6 272 29.8
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.0e-18 99.0 119 45.4
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.8e-16 90.9 172 36.6
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.9e-14 83.2 231 29.4
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 7.7e-14 82.8 271 25.8
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 5.0e-13 80.1 138 37.0
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 2.5e-12 77.8 112 40.2
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 4.2e-12 77.0 58 58.6
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 2.1e-11 74.7 72 48.6
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 1.3e-08 65.5 281 24.2
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.8e-07 61.6 116 29.3


User provided reference genes

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