Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.5e-86 321.6 165 100.0
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.0e-58 228.4 160 77.5
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.8e-58 227.6 160 77.5
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 9.8e-49 197.2 186 62.4
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.1e-44 183.7 136 74.3
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 1.6e-43 179.9 180 57.8
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.4e-33 145.2 90 82.2
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.4e-33 145.2 90 82.2
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 2.2e-32 142.9 218 45.0
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 9.3e-31 137.5 182 52.2
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 7.8e-30 134.4 223 42.6
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 1.9e-28 129.8 181 48.1
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 3.1e-26 122.5 186 47.3
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 7.6e-25 117.9 152 52.6
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.3e-24 117.1 178 45.5
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.7e-24 116.7 178 45.5
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.9e-23 113.2 165 45.5
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 3.5e-22 109.0 186 43.0
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 5.1e-21 105.1 179 40.2
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.1e-21 105.1 179 40.2
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 5.1e-21 105.1 187 41.2
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 6.7e-21 104.8 186 42.5
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.1e-20 104.0 185 43.8
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.9e-20 103.2 179 39.7
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.9e-20 103.2 179 39.7
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 3.3e-20 102.4 184 41.3
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 4.3e-20 102.1 187 40.6
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 5.6e-20 101.7 181 43.1
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 5.6e-20 101.7 182 42.3
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 5.6e-20 101.7 187 41.7
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 9.6e-20 100.9 177 41.2
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.3e-19 100.5 184 42.4
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 1.6e-19 100.1 185 40.5
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.6e-19 100.1 182 42.3
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 1.4e-18 97.1 179 40.8
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 1.8e-18 96.7 179 37.4
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 5.3e-18 95.1 177 44.1
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 6.9e-18 94.7 185 38.9
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 6.9e-18 94.7 185 39.5
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 2.0e-17 93.2 186 39.2
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 4.5e-17 92.0 180 38.3
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 5.8e-17 91.7 187 39.0
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 2.2e-16 89.7 184 37.5
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 2.9e-16 89.4 171 38.0
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 3.8e-16 89.0 186 40.3
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.4e-15 87.0 183 38.8
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 2.4e-15 86.3 186 38.2
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 2.4e-15 86.3 186 36.6
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 4.2e-15 85.5 181 39.8
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 5.5e-15 85.1 179 39.1
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 5.5e-15 85.1 185 36.8
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.0e-14 81.6 143 38.5
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 7.9e-14 81.3 185 36.8
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 3.0e-13 79.3 169 38.5
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 3.9e-13 79.0 169 38.5
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.9e-13 79.0 186 38.2
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 3.9e-13 79.0 171 39.8
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 5.1e-13 78.6 184 36.4
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 6.7e-13 78.2 190 33.2
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 6.7e-13 78.2 183 36.1
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 6.7e-13 78.2 180 34.4
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 1.5e-12 77.0 183 37.2
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.5e-12 77.0 168 38.7
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 3.3e-12 75.9 189 35.4
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 3.3e-12 75.9 175 37.1
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 3.3e-12 75.9 202 34.2
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 4.3e-12 75.5 176 38.1
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 4.3e-12 75.5 189 34.4
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 4.3e-12 75.5 189 34.4
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 5.6e-12 75.1 190 35.3
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.3e-11 73.9 161 38.5
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 2.1e-11 73.2 176 37.5
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 2.1e-11 73.2 167 36.5
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 2.8e-11 72.8 176 36.9
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.7e-11 72.4 186 34.9
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 4.8e-11 72.0 184 34.8
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 6.2e-11 71.6 177 36.7
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.1e-10 70.9 89 51.7
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 1.8e-10 70.1 189 33.9
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 3.1e-10 69.3 188 34.0
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 5.3e-10 68.6 187 34.8
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 5.3e-10 68.6 187 35.8
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.5e-09 67.0 181 38.1
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 1.5e-09 67.0 89 51.7
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 2.0e-09 66.6 175 36.6
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 2.0e-09 66.6 185 34.1
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 4.5e-09 65.5 169 35.5
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 5.8e-09 65.1 175 36.0
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 3.8e-08 62.4 137 38.7
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.1e-07 60.8 68 54.4
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 1.9e-07 60.1 72 50.0
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 2.5e-07 59.7 158 33.5
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 3.2e-07 59.3 69 55.1
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.2e-06 57.4 176 34.7
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 1.6e-06 57.0 188 34.6


User provided reference genes

Program Settings