Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 7.6e-245 850.1 446 100.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.9e-241 837.8 454 97.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.5e-240 835.1 446 98.2
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.3e-223 779.6 454 89.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.1e-216 756.5 454 88.8
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.5e-216 756.1 460 87.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 3.3e-216 755.0 454 87.2
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 7.2e-203 710.7 490 79.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.4e-198 695.7 453 81.5
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 5.9e-197 691.0 453 81.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 5.0e-196 688.0 451 81.6
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 2.5e-195 685.6 445 80.4
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.6e-194 682.9 453 79.2
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 2.7e-194 682.2 452 79.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.4e-193 679.9 451 80.3
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.3e-193 679.1 452 80.3
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 6.7e-193 677.6 453 79.5
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 6.7e-193 677.6 456 78.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.0e-192 676.0 456 78.5
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 7.4e-192 674.1 454 78.0
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 9.7e-192 673.7 449 80.0
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.3e-191 673.3 452 77.9
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 3.7e-191 671.8 459 78.6
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 4.8e-191 671.4 466 76.0
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.1e-190 670.2 452 78.3
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.4e-187 659.8 455 76.9
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.9e-187 659.4 451 78.0
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.1e-186 656.0 451 76.3
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 3.6e-186 655.2 446 76.9
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.6e-186 655.2 455 76.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 6.1e-186 654.4 455 78.0
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.4e-185 653.3 454 75.8
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.0e-184 649.4 459 76.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 7.4e-184 647.5 445 78.2
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.3e-183 646.7 444 78.2
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 6.3e-183 644.4 444 77.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.1e-182 642.1 451 75.6
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.1e-182 641.7 453 78.6
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.6e-181 639.0 444 75.9
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.3e-180 636.7 455 75.6
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 6.5e-180 634.4 446 74.9
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.5e-179 633.3 452 73.9
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.9e-179 632.9 446 76.5
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 7.2e-179 630.9 454 73.3
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 8.0e-178 627.5 446 74.9
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.0e-177 627.1 450 73.8
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.4e-177 626.7 444 74.3
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.8e-177 626.3 453 72.6
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.3e-177 625.9 446 75.3
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.0e-177 625.5 454 74.7
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 6.7e-177 624.4 444 74.1
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 8.8e-177 624.0 453 75.5
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.5e-176 623.2 430 77.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 5.7e-176 621.3 454 73.6
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 2.2e-175 619.4 452 75.0
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 4.8e-175 618.2 419 78.0
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 8.2e-175 617.5 444 75.2
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.4e-174 616.7 459 73.0
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 4.1e-174 615.1 444 75.0
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 5.3e-174 614.8 449 75.1
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.3e-174 614.8 426 75.8
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.6e-173 613.2 456 72.6
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.6e-173 613.2 409 78.2
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.7e-173 612.5 452 75.0
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 5.9e-173 611.3 445 74.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.2e-172 609.4 458 70.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.6e-170 603.2 446 72.4
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.6e-170 602.1 496 68.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 3.6e-170 602.1 444 71.2
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.7e-170 601.7 452 72.3
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 6.1e-170 601.3 444 70.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 6.1e-170 601.3 412 76.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.4e-169 600.1 444 73.9
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.4e-169 600.1 394 79.2
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-169 599.7 446 72.4
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 4.0e-169 598.6 444 73.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 2.0e-168 596.3 444 70.5
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 2.0e-168 596.3 452 71.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 2.6e-168 595.9 444 71.2
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.6e-168 595.9 453 70.2
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 4.4e-168 595.1 444 70.0
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 4.4e-168 595.1 444 70.9
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.3e-167 593.6 449 69.5
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 2.2e-167 592.8 444 70.0
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.8e-167 592.4 444 69.8
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 4.8e-167 591.7 444 69.8
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 4.8e-167 591.7 444 70.0
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.1e-166 590.5 453 71.7
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 3.1e-166 589.0 459 71.7
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 7.0e-166 587.8 475 69.1
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 9.1e-166 587.4 456 72.1
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-165 587.0 447 70.0
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-164 582.8 446 70.6
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 6.6e-164 581.3 453 68.0
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.5e-163 580.1 450 67.8
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.5e-163 580.1 452 69.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.3e-163 578.9 461 72.0
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.1e-162 576.2 474 65.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 3.6e-162 575.5 447 68.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.0e-161 573.9 444 68.7
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 2.0e-160 569.7 448 68.5
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 4.4e-160 568.5 448 68.3
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 5.7e-160 568.2 456 66.7
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.3e-159 567.0 454 69.6
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.3e-159 567.0 455 68.6
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.8e-158 563.1 453 68.9
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 7.0e-158 561.2 473 64.7
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 7.8e-157 557.8 444 67.6
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 3.3e-155 552.4 452 66.4
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.3e-153 546.2 452 65.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.7e-151 538.9 457 65.2
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.8e-144 515.0 369 73.7
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 6.4e-143 511.5 415 68.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.4e-142 509.6 415 66.7
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.1e-142 508.8 394 68.0
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.6e-140 501.5 428 65.4
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.2e-138 497.3 428 65.4
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 2.1e-133 479.9 479 59.9
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 5.1e-132 475.3 391 65.0
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.6e-132 474.6 508 55.1
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-128 464.2 453 61.6
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.5e-128 463.8 344 71.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 3.8e-127 459.1 425 61.4
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.6e-125 453.8 469 54.8
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.3e-123 446.0 343 69.7
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.9e-115 420.2 475 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.3e-113 412.1 502 47.4
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 9.9e-112 407.9 446 54.0
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 7.1e-110 401.7 480 53.5
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.3e-106 391.0 491 47.3
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.4e-105 386.7 467 51.4
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.4e-97 360.1 242 74.0
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 7.6e-96 355.1 396 52.8
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 5.7e-91 339.0 345 55.9
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.3e-83 313.2 477 41.7
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.3e-79 301.2 371 51.5
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.4e-78 297.7 517 39.8
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 6.3e-74 282.3 392 43.4
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 5.5e-62 242.7 246 59.3
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 4.0e-60 236.5 174 69.0
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 5.7e-59 232.6 128 87.5
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.7e-58 231.1 261 55.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 8.3e-58 228.8 375 41.6
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-57 228.0 178 64.6
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-55 221.9 179 63.7
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 2.7e-53 213.8 172 64.0
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.2e-51 208.4 231 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.0e-47 193.0 392 36.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 3.0e-44 183.7 270 41.9
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 8.0e-37 159.1 195 56.4
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 3.1e-36 157.1 352 33.2
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.1e-33 148.7 141 54.6
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-31 141.0 109 61.5
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.2e-29 135.2 160 54.4
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.6e-29 134.8 142 58.5
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.8e-28 131.3 146 59.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.8e-27 126.3 167 53.3
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 7.5e-27 125.9 172 46.5
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.3e-26 125.2 116 56.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.8e-20 104.8 83 74.7
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 3.2e-17 94.0 57 73.7
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 7.1e-17 92.8 315 26.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 2.1e-16 91.3 99 47.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 7.8e-16 89.4 200 34.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.1e-15 86.7 54 75.9
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 3.8e-10 70.5 129 44.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-09 68.9 109 36.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.2e-08 65.5 46 73.9
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.7e-08 64.3 42 81.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-07 61.2 35 85.7
Actinidia22797 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.0e-07 60.8 107 42.1
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 5.1e-07 60.1 40 72.5


User provided reference genes

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