Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.7e-112 408.7 205 100.0
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.6e-109 398.3 218 93.6
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 3.5e-88 328.6 230 74.8
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 5.6e-86 321.2 231 74.9
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.6e-83 312.4 223 73.5
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.4e-83 312.0 230 71.7
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 8.4e-82 307.4 225 72.4
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 8.4e-82 307.4 231 71.0
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 3.2e-81 305.4 229 68.6
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.9e-79 298.5 229 66.8
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.6e-77 293.1 231 66.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.1e-77 292.7 229 65.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 6.2e-77 291.2 229 64.6
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-76 289.7 229 65.1
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.1e-76 288.9 205 71.7
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.1e-76 288.9 229 65.1
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.3e-76 288.1 214 72.0
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-75 286.2 229 64.6
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 3.4e-75 285.4 231 64.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 3.4e-75 285.4 231 66.7
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 3.4e-75 285.4 231 64.5
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 4.5e-75 285.0 231 65.8
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 7.6e-75 284.3 231 66.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 9.9e-75 283.9 231 63.6
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.7e-74 283.1 231 65.4
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.7e-74 283.1 234 65.8
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.7e-74 283.1 231 65.4
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 2.9e-74 282.3 234 65.4
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 6.4e-74 281.2 231 64.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 8.4e-74 280.8 225 64.4
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.1e-73 280.4 226 64.6
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.1e-73 280.4 226 64.6
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.1e-73 280.4 213 67.1
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.4e-73 280.0 224 66.1
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.4e-73 280.0 233 65.7
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.4e-73 279.3 218 66.1
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.2e-73 278.5 231 64.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-72 276.9 231 64.1
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.2e-72 276.9 233 64.8
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.6e-72 276.6 233 64.8
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.7e-72 275.8 231 62.8
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.7e-72 275.8 223 65.0
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.7e-72 275.8 233 64.4
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 4.6e-72 275.0 224 65.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 6.0e-72 274.6 232 63.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 7.9e-72 274.2 232 63.8
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 7.9e-72 274.2 232 63.4
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.0e-71 273.9 223 65.5
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.0e-71 273.9 231 64.1
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 2.3e-71 272.7 226 64.6
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.5e-70 270.0 210 65.7
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.5e-70 270.0 230 61.3
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.6e-69 266.5 223 63.2
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.8e-69 265.8 228 62.3
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.8e-69 265.8 234 62.4
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 3.7e-69 265.4 227 63.0
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.1e-68 262.3 223 63.2
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 5.3e-68 261.5 226 62.8
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 5.3e-68 261.5 230 60.9
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 1.5e-67 260.0 231 61.0
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.5e-67 258.5 229 60.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 5.8e-67 258.1 226 61.9
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 5.8e-67 258.1 221 61.5
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 7.6e-67 257.7 229 60.7
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.0e-66 257.3 227 60.8
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.2e-66 256.1 226 61.5
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.9e-66 255.8 214 63.6
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.8e-66 255.4 205 64.4
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.1e-65 253.8 228 59.2
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.2e-65 252.3 222 60.8
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 9.3e-65 250.8 218 59.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 2.7e-64 249.2 272 53.3
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 4.6e-64 248.4 218 59.6
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 6.0e-64 248.1 217 59.4
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.3e-63 246.9 204 63.7
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.3e-63 246.9 230 60.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.8e-63 246.5 217 59.0
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 5.1e-63 245.0 221 59.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 8.7e-63 244.2 217 58.5
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.1e-62 243.8 196 63.8
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.5e-62 242.7 217 60.8
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 7.4e-62 241.1 197 65.0
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.1e-60 237.3 256 53.1
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.1e-60 237.3 204 62.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 4.1e-60 235.3 197 60.4
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.5e-59 233.4 208 60.1
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.0e-58 230.7 232 56.5
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-58 230.3 229 56.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 2.2e-58 229.6 184 67.4
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.1e-57 227.3 207 59.9
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 3.2e-57 225.7 177 71.2
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.8e-55 219.9 185 61.6
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 5.1e-55 218.4 209 57.4
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 5.1e-55 218.4 254 50.0
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 6.7e-55 218.0 177 68.4
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 6.7e-55 218.0 188 61.2
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.5e-54 216.9 160 67.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.7e-53 212.2 210 56.7
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 8.2e-53 211.1 123 79.7
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.6e-51 206.1 194 57.7
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.2e-50 203.0 219 55.3
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.9e-50 202.6 229 53.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 9.4e-49 197.6 207 55.1
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.4e-47 193.7 229 51.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.2e-45 186.4 190 52.6
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 6.9e-44 181.4 252 47.2
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 2.6e-43 179.5 208 52.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.9e-42 176.0 212 50.9
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-41 174.1 153 58.8
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.9e-41 173.3 214 48.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.6e-40 170.2 96 79.2
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 6.1e-40 168.3 171 57.3
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 7.9e-40 167.9 176 56.2
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.9e-39 165.6 178 53.4
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 4.8e-37 158.7 180 51.7
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.8e-36 156.8 188 51.6
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 7.7e-35 151.4 208 42.8
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 2.0e-27 126.7 80 77.5
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.8e-26 122.5 152 49.3
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 2.7e-24 116.3 73 78.1
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 6.3e-21 105.1 132 48.5
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 7.0e-20 101.7 67 65.7
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.7e-19 99.8 57 73.7
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.5e-17 92.0 71 67.6
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.7e-16 89.0 49 79.6
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.0e-15 87.8 50 72.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.4e-15 87.4 113 44.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-13 80.5 94 54.3
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-13 80.5 48 81.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.8e-13 79.7 55 72.7
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.8e-13 79.7 48 81.2
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.7e-13 79.3 86 51.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.9e-13 79.0 48 79.2
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 3.1e-12 76.3 86 50.0
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-11 73.6 59 64.4
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.7e-11 73.2 43 79.1
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.5e-11 72.8 59 64.4
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.9e-11 72.0 43 79.1
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 6.8e-07 58.5 29 86.2
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.6e-06 56.6 105 36.2


User provided reference genes

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