Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.0e-85 317.8 166 100.0
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.1e-74 282.0 166 88.6
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 1.4e-63 246.5 191 72.3
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.2e-57 226.9 160 77.5
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 9.9e-57 223.8 166 74.7
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 1.1e-55 220.3 186 67.7
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.2e-47 192.2 120 83.3
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.2e-47 192.2 120 83.3
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.7e-45 186.4 223 52.5
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 9.6e-44 180.6 228 50.4
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 7.6e-41 171.0 189 57.1
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 3.0e-37 159.1 193 53.9
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 1.1e-36 157.1 186 53.2
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 4.0e-34 148.7 183 50.3
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 9.0e-34 147.5 183 50.3
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 4.5e-33 145.2 189 48.7
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.8e-33 144.8 189 48.7
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.0e-32 144.1 188 50.0
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.7e-32 143.3 193 50.8
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.2e-32 142.9 189 48.1
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.2e-32 142.9 189 48.1
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 2.5e-31 139.4 189 49.7
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 3.2e-31 139.0 165 56.4
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 3.2e-31 139.0 189 47.6
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 3.2e-31 139.0 194 46.9
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 5.5e-31 138.3 191 49.7
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 9.3e-31 137.5 194 46.4
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.2e-30 137.1 194 46.4
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.6e-30 136.7 195 47.7
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 2.1e-30 136.3 175 52.0
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 2.7e-30 136.0 189 48.7
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 4.6e-30 135.2 190 48.9
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 1.3e-29 133.7 191 49.7
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.8e-29 133.3 191 48.7
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 1.5e-28 130.2 189 47.1
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 7.4e-28 127.9 188 45.2
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 7.4e-28 127.9 188 45.7
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.3e-27 127.1 191 46.1
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 1.3e-27 127.1 189 46.0
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 3.7e-27 125.6 187 44.9
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 4.8e-27 125.2 188 46.8
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.1e-26 124.0 194 44.3
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 1.8e-26 123.2 186 43.5
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 9.0e-26 120.9 188 48.4
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.2e-25 120.6 184 46.7
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 7.6e-25 117.9 179 45.8
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.7e-24 116.7 188 42.6
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.9e-24 115.9 188 40.4
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 6.5e-24 114.8 187 43.9
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.5e-24 114.8 153 47.1
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 2.5e-23 112.8 187 43.9
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 3.2e-23 112.5 190 42.6
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 3.2e-23 112.5 190 42.6
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 3.2e-23 112.5 188 42.0
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 5.5e-23 111.7 191 44.0
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 5.5e-23 111.7 189 43.9
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 5.5e-23 111.7 193 44.6
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 9.3e-23 110.9 188 43.1
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.2e-22 110.5 191 45.5
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.2e-22 110.5 182 43.4
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 4.6e-22 108.6 179 42.5
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 6.1e-22 108.2 182 46.7
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 7.9e-22 107.8 179 42.5
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.0e-21 107.5 167 46.7
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.3e-21 107.1 188 41.5
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 1.3e-21 107.1 182 46.2
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 3.0e-21 105.9 183 40.4
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 5.1e-21 105.1 192 41.7
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 5.1e-21 105.1 180 45.6
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 6.7e-21 104.8 183 45.9
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 6.7e-21 104.8 183 45.9
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 6.7e-21 104.8 207 40.1
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 8.7e-21 104.4 189 40.2
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 8.7e-21 104.4 189 40.2
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.1e-20 104.0 180 45.0
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.5e-20 103.6 180 45.0
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 3.3e-20 102.4 181 42.0
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 5.7e-20 101.7 183 44.8
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 5.7e-20 101.7 181 43.1
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 9.7e-20 100.9 189 39.7
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 1.3e-19 100.5 184 44.6
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 3.7e-19 99.0 191 39.8
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 3.7e-19 99.0 81 67.9
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.7e-19 99.0 193 41.5
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 4.8e-19 98.6 181 42.5
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 2.4e-18 96.3 187 43.9
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 2.4e-18 96.3 188 37.8
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 4.1e-18 95.5 92 60.9
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 6.9e-18 94.7 157 45.2
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 2.0e-17 93.2 192 36.5
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 2.2e-16 89.7 144 47.9
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 5.0e-16 88.6 70 74.3
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 1.1e-15 87.4 186 39.8
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 1.9e-15 86.7 180 38.3
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 9.4e-15 84.3 156 39.1
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 1.2e-14 84.0 186 37.1
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.6e-14 83.6 156 37.8
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 4.6e-14 82.0 180 37.8
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 4.6e-14 82.0 185 37.3
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 7.9e-14 81.3 154 39.6
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 1.4e-13 80.5 70 68.6
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.8e-13 80.1 117 44.4
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 9.7e-12 74.3 186 35.5
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 1.1e-10 70.9 71 60.6
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 6.9e-10 68.2 76 56.6
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 2.9e-08 62.8 193 32.6
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.4e-07 60.5 155 36.8


User provided reference genes

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