Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 2166.0 1076 100.0
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1955.6 1098 90.6
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1738.4 1099 80.1
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1619.8 1100 74.5
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1615.9 1099 74.1
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1608.2 1119 72.9
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1598.6 1088 76.2
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1597.8 1099 74.0
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1568.5 1079 75.2
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1568.1 1019 81.1
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1564.3 1013 81.2
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1563.9 1098 71.5
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1558.5 1107 72.0
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1557.3 1095 72.0
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1552.3 1113 71.1
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1549.6 1099 71.9
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1549.3 1113 70.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1548.1 1098 71.5
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1546.2 1101 71.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1544.6 1106 71.1
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1543.9 1099 71.5
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1543.5 1100 71.4
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1542.7 1102 72.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1515.7 1098 70.2
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1513.8 1099 71.4
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1510.4 1100 70.3
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1510.4 1100 70.7
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1495.7 1032 73.3
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1489.2 1126 68.0
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1482.6 1095 69.6
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1480.3 1137 67.0
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1479.5 1102 69.4
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1474.1 1110 68.5
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1472.6 1010 73.9
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1466.1 1094 68.2
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1458.4 1107 68.2
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1456.8 1190 65.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1456.0 1094 69.4
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1456.0 1102 67.5
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1454.9 1102 67.8
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1451.0 1095 68.7
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1449.9 1096 67.9
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1447.2 1102 67.4
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1439.5 1098 67.8
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1439.1 1220 62.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1438.3 1096 67.6
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1437.2 1096 66.8
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1436.8 1095 68.2
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1436.0 1096 67.6
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1435.2 1098 67.7
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1435.2 877 79.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1434.5 1096 67.4
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1433.3 1096 67.1
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1432.9 1104 67.7
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1430.2 1120 66.0
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1429.5 1097 66.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1424.1 1096 67.2
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1421.4 1097 67.9
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1420.6 1091 67.9
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1419.8 1097 66.5
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1416.0 1096 66.5
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1415.2 1095 66.5
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1411.0 1109 66.0
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1408.7 1110 66.0
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1406.7 1134 65.1
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1405.6 820 84.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1405.2 1100 67.6
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1399.8 1148 64.5
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1399.4 1099 66.9
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1398.6 1146 63.1
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1397.9 1102 65.3
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1397.5 1100 66.6
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1394.4 1102 65.2
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1391.7 1101 64.9
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1390.9 1133 63.4
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1387.5 1056 67.4
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1387.1 874 77.8
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1386.7 1101 64.7
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1380.9 1088 66.3
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1376.7 879 76.7
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1350.1 871 76.1
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1338.9 857 76.3
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1331.6 848 77.0
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1330.9 1091 64.7
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1311.6 1095 61.8
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1302.7 1184 58.9
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1295.4 1093 61.4
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1293.9 1218 58.4
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1288.5 872 73.1
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1276.5 826 74.8
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1272.7 945 68.9
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1263.4 864 72.0
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1221.8 1058 61.6
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1214.1 1111 59.4
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 0.0e+00 1159.8 700 81.7
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1117.4 882 65.4
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1116.7 1097 56.6
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1102.4 1079 55.1
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.8e-284 983.0 641 74.7
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 2.3e-279 966.1 910 56.4
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.4e-260 903.7 609 74.9
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.4e-249 867.1 1121 44.9
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 7.2e-241 838.2 987 46.7
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.5e-233 813.1 716 60.3
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 3.7e-229 799.3 979 45.5
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 2.7e-211 740.0 499 74.7
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 7.5e-206 721.8 537 70.2
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 7.0e-196 688.7 964 41.6
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.6e-163 581.3 472 64.2
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 4.0e-159 566.6 405 71.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 3.8e-133 480.3 321 74.5
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.2e-128 464.5 389 60.2
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 6.3e-128 463.0 1085 32.7
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 2.0e-113 414.8 412 57.5
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.4e-95 355.5 270 67.0
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.9e-88 330.5 225 76.4
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.6e-83 315.5 233 72.5
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-77 294.7 174 90.2
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.9e-76 292.0 291 55.3
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.6e-70 272.3 203 71.4
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-69 268.1 181 81.2
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.8e-58 232.3 219 57.5
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 2.1e-51 208.8 177 59.9
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 5.3e-50 204.1 202 56.9
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.3e-48 199.5 154 68.8
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 3.2e-47 194.9 144 67.4
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.4e-47 194.1 100 93.0
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.1e-46 192.2 100 92.0
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 3.5e-46 191.4 202 59.9
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 7.3e-44 183.7 178 57.9
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.8e-40 171.4 171 52.6
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.4e-39 168.7 177 58.8
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.7e-38 165.2 162 54.9
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 8.7e-37 160.2 176 52.8
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 6.2e-35 154.1 145 61.4
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-34 152.9 100 77.0
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 3.1e-34 151.8 95 74.7
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.9e-31 142.5 90 73.3
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 7.1e-31 140.6 95 76.8
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 3.0e-29 135.2 200 45.0
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 6.5e-24 117.5 99 60.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 1.1e-23 116.7 171 43.9
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 2.1e-22 112.5 143 51.0
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.6e-22 111.3 143 49.0
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 5.7e-20 104.4 73 71.2
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.4e-18 99.8 108 47.2
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 2.4e-18 99.0 95 57.9
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.2e-17 96.7 93 53.8
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.7e-16 92.8 73 63.0
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.9e-15 89.4 208 32.7
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.9e-15 89.4 78 60.3
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.6e-14 84.7 64 62.5
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.0e-13 83.6 53 73.6
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-13 82.0 50 76.0
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 3.0e-13 82.0 71 63.4
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.9e-13 81.6 50 76.0
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 9.7e-12 77.0 54 68.5
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 3.7e-11 75.1 100 50.0
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 3.7e-11 75.1 54 68.5
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.9e-10 70.9 41 85.4
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.2e-09 70.1 531 24.9
SEGI_26020 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.2e-06 60.1 136 37.5
SGA_v2.0_scaffold7G03828 Striga asiatica HOM05D016705 ORTHO05D004689 6.1e-06 57.8 111 33.3
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 7.9e-06 57.4 36 77.8


User provided reference genes

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