Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020473 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 2.2e-208 728.8 378 100.0
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 7.1e-119 431.4 426 61.0
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 2.0e-105 386.7 355 63.7
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 8.4e-104 381.3 367 60.8
Dinv36280 Davidia involucrata HOM05D000104 ORTHO05D005604 1.9e-100 370.2 324 64.5
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 3.4e-89 332.8 442 48.6
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 4.8e-83 312.4 392 51.8
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.3e-80 304.3 392 51.5
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 2.2e-80 303.5 397 49.9
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 8.5e-80 301.6 392 51.5
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 3.0e-77 293.1 396 48.0
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 5.3e-74 282.3 390 46.7
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 1.0e-72 278.1 396 45.7
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 3.2e-71 273.1 393 45.5
Cpa.g.sc16.100 Carica papaya HOM05D000104 ORTHO05D005604 1.6e-70 270.8 356 50.0
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 2.7e-70 270.0 390 45.6
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.4e-69 267.7 396 46.5
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 2.3e-69 266.9 401 43.1
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 2.6e-68 263.5 397 45.6
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.6e-68 263.5 396 46.0
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 2.2e-67 260.4 406 43.6
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 4.8e-67 259.2 382 46.1
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.3e-67 258.8 397 45.6
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 3.1e-66 256.5 392 45.9
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 1.3e-64 251.1 390 43.8
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 2.2e-64 250.4 394 44.4
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 2.6e-60 236.9 392 42.1
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.6e-60 236.9 508 37.6
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 8.3e-59 231.9 394 42.4
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 2.7e-57 226.9 396 42.9
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 1.0e-56 224.9 400 42.0
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.7e-56 224.2 396 42.7
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 5.0e-56 222.6 374 43.3
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.6e-54 217.6 396 41.9
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 3.0e-53 213.4 396 40.7
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 7.5e-52 208.8 394 40.6
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 7.0e-50 202.2 396 39.6
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 1.0e-48 198.4 403 40.0
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 1.3e-48 198.0 393 40.2
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 1.3e-48 198.0 328 42.4
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 1.2e-46 191.4 355 41.4
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 4.4e-44 183.0 260 48.5
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 9.8e-44 181.8 260 46.9
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 7.0e-42 175.6 260 46.5
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 2.3e-40 170.6 190 54.2
Hma1.2p1_3230F.1_g334250 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 8.6e-40 168.7 316 40.5
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 5.6e-39 166.0 462 34.0
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 8.0e-38 162.2 271 43.9
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 4.0e-37 159.8 273 42.9
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 4.0e-37 159.8 217 46.5
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 6.8e-37 159.1 359 36.8
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 8.9e-37 158.7 272 42.6
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 1.2e-36 158.3 269 41.6
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 1.7e-35 154.5 268 44.0
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 2.2e-35 154.1 453 34.0
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 4.9e-35 152.9 269 42.0
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 1.4e-34 151.4 178 52.8
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 3.2e-34 150.2 232 46.1
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 4.1e-34 149.8 405 32.8
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 7.0e-34 149.1 241 45.6
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 7.0e-34 149.1 266 39.5
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 9.2e-34 148.7 198 47.0
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 2.0e-33 147.5 232 46.1
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 7.8e-33 145.6 325 38.5
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.1e-31 141.7 405 32.3
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 1.5e-31 141.4 334 36.5
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 3.6e-30 136.7 178 51.1
Actinidia06887 Actinidia chinensis HOM05D000738 ORTHO05D000675 6.2e-30 136.0 159 56.6
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 2.6e-28 130.6 244 42.2
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.3e-27 128.3 244 41.4
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 3.7e-27 126.7 180 47.8
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 8.3e-27 125.6 243 40.7
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 1.9e-26 124.4 357 33.3
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 1.6e-25 121.3 186 45.7
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 1.0e-24 118.6 231 42.0
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 1.3e-24 118.2 340 33.2
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 6.6e-24 115.9 230 39.1
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 2.1e-22 110.9 174 43.7
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 1.1e-21 108.6 172 42.4
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 2.6e-20 104.0 212 37.3
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 6.4e-19 99.4 183 41.5
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 6.4e-19 99.4 146 45.2
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 1.1e-18 98.6 214 36.9
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 1.4e-18 98.2 176 39.2
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 3.2e-18 97.1 223 35.4
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 7.1e-18 95.9 176 41.5
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 6.0e-17 92.8 214 34.6
TPR.G14627 Trifolium pratense HOM05D000319 ORTHO05D000903 6.0e-17 92.8 139 43.9
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 6.6e-16 89.4 213 34.3
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 7.3e-15 85.9 174 36.8
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 3.6e-14 83.6 174 36.8
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 6.2e-14 82.8 174 36.2
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 6.2e-14 82.8 339 28.6
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 9.0e-13 79.0 305 31.5
TAR365G1084 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.5e-12 78.2 84 57.1
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 1.5e-12 78.2 447 30.0
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 1.3e-11 75.1 89 44.9
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 1.3e-11 75.1 393 29.3
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.7e-11 74.7 89 47.2
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 4.9e-11 73.2 97 46.4
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 1.1e-10 72.0 88 44.3
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 1.4e-10 71.6 175 34.9
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 1.4e-10 71.6 101 43.6
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 9.3e-10 68.9 58 58.6
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 9.3e-10 68.9 101 41.6
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 2.1e-09 67.8 176 35.8
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 3.5e-09 67.0 94 41.5
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 3.0e-08 63.9 89 46.1
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 6.6e-08 62.8 142 36.6
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 7.3e-07 59.3 296 25.0
TAR365G0692 Trochodendron aralioides HOM05D000104 ORTHO05D005604 9.6e-07 58.9 101 41.6
SHI00291 Sapria himalayana HOM05D000104 ORTHO05D005604 3.6e-06 57.0 170 36.5


User provided reference genes

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